RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TRAV34A0A0B4J273 112 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 KANTRA0A1W2PQU2 76 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 IFNA7P01567 189 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 IGHV3-53P01767 116 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 SEC11BP0C7V7 166 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 Q6ZNX1 250 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 Q6ZR54 194 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 TMUB2Q71RG4 321 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 TMEM75Q8N9X5 138 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 NDFIP1Q9BT67 221 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 C11orf21Q9P2W6 132 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 LINC00588Q9Y4M8 146 aa10.45□□□□□ -0.74
VPS39-210ENST00000568357 TRGV11A0A075B6L2 103 aa10.44□□□□□ -0.74
VPS39-210ENST00000568357 IGHV3-16A0A0C4DH30 117 aa10.44□□□□□ -0.74
VPS39-210ENST00000568357 H3BNG1 76 aa10.44□□□□□ -0.74
VPS39-210ENST00000568357 TYMSP04818 313 aa10.44□□□□□ -0.74
VPS39-210ENST00000568357 CCL18P55774 89 aa10.44□□□□□ -0.74
VPS39-210ENST00000568357 RASL10AQ92737 203 aa10.44□□□□□ -0.74
VPS39-210ENST00000568357 SPXQ9BT56 116 aa10.44□□□□□ -0.74
VPS39-210ENST00000568357 GCGP01275 180 aa10.43□□□□□ -0.74
VPS39-210ENST00000568357 FAM3BP58499 235 aaPredicted RBP10.43□□□□□ -0.74
VPS39-210ENST00000568357 FHL2Q14192 279 aa10.43□□□□□ -0.74
VPS39-210ENST00000568357 ZNRF2Q8NHG8 242 aa10.43□□□□□ -0.74
VPS39-210ENST00000568357 MBD3L1Q8WWY6 194 aa10.43□□□□□ -0.74
VPS39-210ENST00000568357 NKX6-2Q9C056 277 aaPredicted RBP10.43□□□□□ -0.74
VPS39-210ENST00000568357 FBLL1A6NHQ2 334 aaKnown RBP10.42□□□□□ -0.74
VPS39-210ENST00000568357 UMAD1C9J7I0 102 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 PEX7O00628 323 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 ESRGQ1W209 222 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 LGALSLQ3ZCW2 172 aaPredicted RBP10.42□□□□□ -0.74
VPS39-210ENST00000568357 SMUG1Q53HV7 270 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 SAPCD1Q5SSQ6 148 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 STOML3Q8TAV4 291 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 FAM213BQ8TBF2 198 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 SFT2D1Q8WV19 159 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 KCNS1Q96KK3 526 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 SDF2L1Q9HCN8 221 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 ARL2-SNX15V9GYD0 113 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 DNAH17Q9UFH2 4485 aa10.42□□□□□ -0.74
VPS39-210ENST00000568357 A0A096LPF7 62 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 RTL8CO15255 209 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 PFDN1O60925 122 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 PFN1P07737 140 aaKnown RBP10.41□□□□□ -0.74
VPS39-210ENST00000568357 SFTA3P0C7M3 94 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 MED14OSP0DP75 135 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 TCTE3Q8IZS6 198 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 HIST1H2BAQ96A08 127 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 ZNF479Q96JC4 524 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 HHLA3Q9XRX5 114 aa10.41□□□□□ -0.74
VPS39-210ENST00000568357 A0A1B0GV50 99 aa10.4□□□□□ -0.74
VPS39-210ENST00000568357 M0R2P5 195 aa10.4□□□□□ -0.74
VPS39-210ENST00000568357 PAX4O43316 350 aa10.4□□□□□ -0.74
VPS39-210ENST00000568357 CST9LP1Q5W188 147 aa10.4□□□□□ -0.74
VPS39-210ENST00000568357 PAGE4O60829 102 aa10.39□□□□□ -0.75
VPS39-210ENST00000568357 TPT1P13693 172 aaKnown RBP10.39□□□□□ -0.75
VPS39-210ENST00000568357 PPT1P50897 306 aa10.39□□□□□ -0.75
VPS39-210ENST00000568357 CRYBA4P53673 196 aa10.39□□□□□ -0.75
VPS39-210ENST00000568357 EIF5AP63241 154 aaKnown RBP10.39□□□□□ -0.75
VPS39-210ENST00000568357 ZFP69Q49AA0 526 aa10.39□□□□□ -0.75
VPS39-210ENST00000568357 PRO0255Q9UI72 69 aa10.39□□□□□ -0.75
VPS39-210ENST00000568357 IGKV3D-20A0A0C4DH25 116 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 H2AFB1P0C5Y9 115 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 CRIP1P50238 77 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 DPPA3Q6W0C5 159 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 LINC00336Q6ZUF6 198 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 Q86TA4 180 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 Q9H8V8 135 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 NACAE9PAV3 2078 aa10.38□□□□□ -0.75
VPS39-210ENST00000568357 TRGV4A0A0C4DH28 118 aa10.37□□□□□ -0.75
VPS39-210ENST00000568357 NBDYA0A0U1RRE5 68 aa10.37□□□□□ -0.75
VPS39-210ENST00000568357 FABP5P3A8MUU1 101 aa10.37□□□□□ -0.75
VPS39-210ENST00000568357 SLAQ13239 276 aa10.37□□□□□ -0.75
VPS39-210ENST00000568357 OR4C5Q8NGB2 326 aa10.37□□□□□ -0.75
VPS39-210ENST00000568357 ZC2HC1AQ96GY0 325 aa10.37□□□□□ -0.75
VPS39-210ENST00000568357 C9orf85Q96MD7 179 aa10.37□□□□□ -0.75
VPS39-210ENST00000568357 TRAV4A0A0B4J268 109 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 A0A1B0GVY2 172 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 C9JCJ5 164 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 C1QBP02746 253 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 RNASE3P12724 160 aaKnown RBP10.36□□□□□ -0.75
VPS39-210ENST00000568357 CCL20P78556 96 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 ZNF876PQ49A33 203 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 C1orf134Q5TEV5 83 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 COX8CQ7Z4L0 72 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 FMC1Q96HJ9 113 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 TCEAL7Q9BRU2 100 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 UPK3BQ9BT76 320 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 ZFP30Q9Y2G7 519 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 HSPG2P98160 4391 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 PKD1P98161 4303 aa10.36□□□□□ -0.75
VPS39-210ENST00000568357 hCG_2014768A0A024R1R8 64 aa10.35□□□□□ -0.75
VPS39-210ENST00000568357 TRBV6-1A0A0K0K1D8 114 aa10.35□□□□□ -0.75
VPS39-210ENST00000568357 PRSS29PA6NIE9 313 aa10.35□□□□□ -0.75
VPS39-210ENST00000568357 LTAP01374 205 aa10.35□□□□□ -0.75
VPS39-210ENST00000568357 UBE2G1P62253 170 aa10.35□□□□□ -0.75
VPS39-210ENST00000568357 LCE2DQ5TA82 110 aaPredicted RBP10.35□□□□□ -0.75
VPS39-210ENST00000568357 MRPS16Q9Y3D3 137 aaKnown RBP10.35□□□□□ -0.75
VPS39-210ENST00000568357 ICOSQ9Y6W8 199 aa10.35□□□□□ -0.75
VPS39-210ENST00000568357 HERC1Q15751 4861 aa10.35□□□□□ -0.75
VPS39-210ENST00000568357 PGPEP1LA6NFU8 196 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms