RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PIEZO2Q9H5I5 2752 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 TRAV2A0A0B4J234 112 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 A1L4Q6 167 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 C7orf71A4D174 169 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 K7EQG2 157 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 DPM2O94777 84 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 GAS8-AS1O95177 125 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 TGFAP01135 160 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 IGKCP01834 107 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 SMIM17P0DL12 118 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 GATA1P15976 413 aaPredicted RBP4.7□□□□□ -1.66
CLN3-223ENST00000566472 RNASE4P34096 147 aaKnown RBP4.7□□□□□ -1.66
CLN3-223ENST00000566472 SUMO2P61956 95 aaKnown RBP4.7□□□□□ -1.66
CLN3-223ENST00000566472 SNRPD3P62318 126 aaKnown RBP4.7□□□□□ -1.66
CLN3-223ENST00000566472 ZNF124Q15973 351 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 DEFB113Q30KQ7 82 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 Q8N2B8 174 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 UBE2E2Q96LR5 201 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 ZNF702PQ9H963 129 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 HIGD1BQ9P298 99 aa4.7□□□□□ -1.66
CLN3-223ENST00000566472 TPRP12270 2363 aaKnown RBP4.7□□□□□ -1.66
CLN3-223ENST00000566472 DSPP15924 2871 aaKnown RBP4.7□□□□□ -1.66
CLN3-223ENST00000566472 IGHV4OR15-8A0A075B7B6 117 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 A0A087WW49 117 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 A0A087WX48 190 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 A0A0J9YX75 114 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 A6NDN8 102 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 TAX1BP3O14907 124 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 PRSS1P07477 247 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 NPSP0C0P6 89 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 RNASE3P12724 160 aaKnown RBP4.69□□□□□ -1.66
CLN3-223ENST00000566472 PLNP26678 52 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 FXYD7P58549 80 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 UBE2V1Q13404 147 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 TMEM95Q3KNT9 176 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 TMEM97Q5BJF2 176 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 FAM159AQ6UWV7 190 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 FOXI2Q6ZQN5 318 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 LCNL1Q6ZST4 164 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 ZNF843Q8N446 348 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 TMEM86BQ8N661 226 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 NRGNQ92686 78 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 RASL10AQ92737 203 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 TOMM6Q96B49 74 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 C18orf15Q96N68 181 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 FOXC2Q99958 501 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 DKK2Q9UBU2 259 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 HIVEP3Q5T1R4 2406 aa4.69□□□□□ -1.66
CLN3-223ENST00000566472 PRRC2CQ9Y520 2896 aaKnown RBP4.68□□□□□ -1.66
CLN3-223ENST00000566472 TRAV26-2A0A0B4J265 109 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 TRBV6-5A0A0K0K1A5 114 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 A8MTW9 85 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 RNF223E7ERA6 249 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 F6UB75 175 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 F8VRH5 84 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.68□□□□□ -1.66
CLN3-223ENST00000566472 MGPP08493 103 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 Q5PR19 223 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 Q6ZQT7 251 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 C14orf178Q8N769 122 aaPredicted RBP4.68□□□□□ -1.66
CLN3-223ENST00000566472 SYT8Q8NBV8 401 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 C9orf85Q96MD7 179 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 KIF25-AS1Q9Y6Z4 181 aa4.68□□□□□ -1.66
CLN3-223ENST00000566472 ABCA1O95477 2261 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 IGKV3-7A0A075B6H7 116 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 TRGV11A0A075B6L2 103 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 LINC01619G3V211 115 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 H3BRM9 83 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 H7C1H1 209 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 J3KRW8 73 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 GNRH2O43555 120 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 HOXD3P31249 432 aaPredicted RBP4.67□□□□□ -1.66
CLN3-223ENST00000566472 CDKN1BP46527 198 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 NMUP48645 174 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 PTTG1IPP53801 180 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 LINC00315P59091 139 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 TAL2Q16559 108 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 ADAMTSL5Q6ZMM2 481 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 WFDC3Q8IUB2 231 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 WFDC12Q8WWY7 111 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 TP73-AS1Q9UF72 201 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 HHLA3Q9XRX5 114 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 ABCA2Q9BZC7 2435 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 ATRXP46100 2492 aa4.67□□□□□ -1.66
CLN3-223ENST00000566472 IGHV1OR15-1A0A075B7D0 117 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 IGHV3-16A0A0C4DH30 117 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 CBY3A6NI87 242 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 HOXA3O43365 443 aaPredicted RBP4.66□□□□□ -1.66
CLN3-223ENST00000566472 CD7P09564 240 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 ZNF688P0C7X2 276 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 EDN2P20800 178 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 RIPPLY3P57055 190 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 SYNJ2BPP57105 145 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 DEFB1P60022 68 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 VAMP3Q15836 100 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 PAPPA-AS1Q5QFB9 102 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 PIK3CD-AS1Q5SR53 167 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 ZC2HC1BQ5TFG8 222 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 C10orf99Q6UWK7 81 aa4.66□□□□□ -1.66
CLN3-223ENST00000566472 C2orf66Q6UXQ4 117 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms