RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 Q6AWC8 147 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 ATP5SQ99766 215 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 PAXXQ9BUH6 204 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 UQCC1Q9NVA1 299 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 WDR83OSQ9Y284 106 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 URGCP-MRPS24S4R325 110 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 UBE2L5PA0A1B0GUS4 154 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 CIDEAO60543 219 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 SEC11BP0C7V7 166 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 CAV2P51636 162 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 ZNF876PQ49A33 203 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 C14orf177Q52M58 125 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 PYDC2Q56P42 97 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 UBE2WQ96B02 151 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 OR51M1Q9H341 326 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 SDF2L1Q9HCN8 221 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 KLK12Q9UKR0 248 aa4.74□□□□□ -1.65
VPS4A-203ENST00000564399 PKHD1L1Q86WI1 4243 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 A0A0D9SG52 128 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 RBAKDNA6NC62 111 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 GAGE12JA6NER3 117 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 FAM24AA6NFZ4 105 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 MBPP02686 304 aaPredicted RBP4.73□□□□□ -1.65
VPS4A-203ENST00000564399 TYMSP04818 313 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 MGST1P10620 155 aaKnown RBP4.73□□□□□ -1.65
VPS4A-203ENST00000564399 FGF7P21781 194 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 RANP62826 216 aaKnown RBP4.73□□□□□ -1.65
VPS4A-203ENST00000564399 GAGE1Q13065 139 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 GAGE4Q13068 117 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 GAGE5Q13069 117 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 GAGE13Q4V321 117 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 GCSAMLQ5JQS6 135 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 FFAR4Q5NUL3 377 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 CFAP126Q5VTH2 177 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 PHYHIPLQ96FC7 376 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 DNAJC30Q96LL9 226 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 C2orf50Q96LR7 162 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 SLC25A2Q9BXI2 301 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 LSM5Q9Y4Y9 91 aaKnown RBP4.73□□□□□ -1.65
VPS4A-203ENST00000564399 LENEPQ9Y5L5 61 aa4.73□□□□□ -1.65
VPS4A-203ENST00000564399 A0A087WWC5 75 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 TRAV21A0A0B4J279 112 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 GAS8-AS1O95177 125 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 DPPA3Q6W0C5 159 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 MIR17HGQ75NE6 70 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 HSD17B11Q8NBQ5 300 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 TRIM63Q969Q1 353 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 KCNS1Q96KK3 526 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 FAM167A-AS1Q96KT0 104 aa4.72□□□□□ -1.65
VPS4A-203ENST00000564399 A0A087WX48 190 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 FAM25EA8MYX2 175 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 DIRC3C9JPN6 131 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 OR7C2O60412 319 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 S100A11P31949 105 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 INPP1P49441 399 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 HBG1P69891 147 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 HBG2P69892 147 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 ELOBQ15370 118 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 KCNIP4Q6PIL6 250 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 NIT1Q86X76 327 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 CYB561D1Q8N8Q1 229 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 CHAC2Q8WUX2 184 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 DEDD2Q8WXF8 326 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 ASB13Q8WXK3 278 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 FXYD5Q96DB9 178 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 DPH3Q96FX2 82 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 HYLS1Q96M11 299 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 C1orf43Q9BWL3 253 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 FLVCR2Q9UPI3 526 aa4.71□□□□□ -1.66
VPS4A-203ENST00000564399 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.71□□□□□ -1.66
VPS4A-203ENST00000564399 F6UZH7 168 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 CCSO14618 274 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 NDUFB6O95139 128 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 PVALBP20472 110 aaPredicted RBP4.7□□□□□ -1.66
VPS4A-203ENST00000564399 SULT1A1P50225 295 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 Q0VG73 95 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 ODF1Q14990 250 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 ZNF506Q5JVG8 444 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 SPANXN2Q5MJ10 180 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 STX12Q86Y82 276 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 OR2T35Q8NGX2 323 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 CMTM2Q8TAZ6 248 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 TMED6Q8WW62 240 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 ZC2HC1AQ96GY0 325 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 NPCDR1Q9BY65 106 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 NMES1Q9C002 83 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 TREM1Q9NP99 234 aa4.7□□□□□ -1.66
VPS4A-203ENST00000564399 PGPA6NDG6 321 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 PGPEP1LA6NFU8 196 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 USP17L23D6RBM5 183 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 PANO1I0J062 215 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 HLA-DQA1P01909 254 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 SMIM18P0DKX4 95 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 FGF8P55075 233 aaPredicted RBP4.69□□□□□ -1.66
VPS4A-203ENST00000564399 S100A10P60903 97 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 UBE2L3P68036 154 aaKnown RBP4.69□□□□□ -1.66
VPS4A-203ENST00000564399 ATP6V1FQ16864 119 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 C9orf163Q8N9P6 203 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 OR10G9Q8NGN4 311 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 THAP6Q8TBB0 222 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms