RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 PYGO2Q9BRQ0 406 aa9.94□□□□□ -0.82
VPS39-206ENST00000562662 GFRA4Q9GZZ7 299 aa9.94□□□□□ -0.82
VPS39-206ENST00000562662 SRD5A3Q9H8P0 318 aa9.94□□□□□ -0.82
VPS39-206ENST00000562662 TGIF2-C20orf24A0A0A6YYL0 155 aa9.93□□□□□ -0.82
VPS39-206ENST00000562662 A0A1W2PPQ1 181 aa9.93□□□□□ -0.82
VPS39-206ENST00000562662 GIG44P09565 113 aaPredicted RBP9.93□□□□□ -0.82
VPS39-206ENST00000562662 RPL35AP18077 110 aaKnown RBP9.93□□□□□ -0.82
VPS39-206ENST00000562662 FOXA3P55318 350 aaPredicted RBP9.93□□□□□ -0.82
VPS39-206ENST00000562662 ANXA2RQ3ZCQ2 193 aa9.93□□□□□ -0.82
VPS39-206ENST00000562662 NUP35Q8NFH5 326 aa9.93□□□□□ -0.82
VPS39-206ENST00000562662 TRBV24-1A0A075B6N3 115 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 TRAV9-1A0A075B6T8 112 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 XKRY2A2RUG3 117 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 GRIFINA4D1Z8 144 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 HIGD1CA8MV81 97 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 INSP01308 110 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 IGLC6P0CF74 106 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 NUTF2P61970 127 aaKnown RBP9.92□□□□□ -0.82
VPS39-206ENST00000562662 MUC21Q5SSG8 566 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 MORN3Q6PF18 240 aaPredicted RBP9.92□□□□□ -0.82
VPS39-206ENST00000562662 NAT8BQ9UHF3 227 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 NAGKQ9UJ70 344 aa9.92□□□□□ -0.82
VPS39-206ENST00000562662 IGHV1OR15-1A0A075B7D0 117 aa9.91□□□□□ -0.82
VPS39-206ENST00000562662 KRTAP21-3Q3LHN1 58 aa9.91□□□□□ -0.82
VPS39-206ENST00000562662 TDRG1Q3Y452 100 aa9.91□□□□□ -0.82
VPS39-206ENST00000562662 C20orf144Q9BQM9 153 aa9.91□□□□□ -0.82
VPS39-206ENST00000562662 XCL2Q9UBD3 114 aa9.91□□□□□ -0.82
VPS39-206ENST00000562662 ZMAT5Q9UDW3 170 aaKnown RBP9.91□□□□□ -0.82
VPS39-206ENST00000562662 NBEAL1Q6ZS30 2694 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 NOTCH1P46531 2555 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 TYMSP04818 313 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 DNLZQ5SXM8 178 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 FAM159AQ6UWV7 190 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.9□□□□□ -0.82
VPS39-206ENST00000562662 BTF3L4Q96K17 158 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 KCNS1Q96KK3 526 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 PGLYRP4Q96LB8 373 aa9.9□□□□□ -0.82
VPS39-206ENST00000562662 MGAM2Q2M2H8 2515 aa9.9□□□□□ -0.83
VPS39-206ENST00000562662 DNHD1Q96M86 4753 aa9.9□□□□□ -0.83
VPS39-206ENST00000562662 MUC4Q99102 2169 aa9.9□□□□□ -0.83
VPS39-206ENST00000562662 GNRH2O43555 120 aa9.89□□□□□ -0.83
VPS39-206ENST00000562662 CTRLP40313 264 aa9.89□□□□□ -0.83
VPS39-206ENST00000562662 C1orf158Q8N1D5 194 aa9.89□□□□□ -0.83
VPS39-206ENST00000562662 FER1L6-AS1Q8NA97 138 aa9.89□□□□□ -0.83
VPS39-206ENST00000562662 FAM210BQ96KR6 192 aa9.89□□□□□ -0.83
VPS39-206ENST00000562662 LINC00467Q9BRT7 94 aa9.89□□□□□ -0.83
VPS39-206ENST00000562662 LOC102724200A0A096LPH7 203 aaPredicted RBP9.88□□□□□ -0.83
VPS39-206ENST00000562662 SNAI2O43623 268 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 SPINK4O60575 86 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 FRMD6-AS1P0C7T7 363 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 LYZL1Q6UWQ5 148 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 CSNK1G2-AS1Q8NCQ2 148 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 SSBP4Q9BWG4 385 aaPredicted RBP9.88□□□□□ -0.83
VPS39-206ENST00000562662 C1QTNF4Q9BXJ3 329 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 CSTL1Q9H114 145 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 TP53TG3Q9ULZ0 132 aa9.88□□□□□ -0.83
VPS39-206ENST00000562662 A0A1B0GXF2 115 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 H3BVH4 76 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 OR5AL1P0C617 328 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 ARMS2P0C7Q2 107 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 IGHV4-30-4P0DP06 118 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 MED14OSP0DP75 135 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 RNASE3P12724 160 aaKnown RBP9.87□□□□□ -0.83
VPS39-206ENST00000562662 RAB5AP20339 215 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 ASIPP42127 132 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 MRPL54Q6P161 138 aaKnown RBP9.87□□□□□ -0.83
VPS39-206ENST00000562662 TMEM256Q8N2U0 113 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 LINC01587Q99440 93 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 TPPP3Q9BW30 176 aa9.87□□□□□ -0.83
VPS39-206ENST00000562662 IGHV3-16A0A0C4DH30 117 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 KIR2DL5BA0A0G2JN68 375 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 KIR2DL5BA0A0G2JPC4 375 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 A0A1B0GUT8 65 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 KPRPQ5T749 579 aaPredicted RBP9.86□□□□□ -0.83
VPS39-206ENST00000562662 ATP5L2Q7Z4Y8 100 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 KIR2DL5AQ8N109 375 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 KIR2DL5BQ8NHK3 375 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 CNFNQ9BYD5 112 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 SCRT2Q9NQ03 307 aa9.86□□□□□ -0.83
VPS39-206ENST00000562662 TRGV11A0A075B6L2 103 aa9.85□□□□□ -0.83
VPS39-206ENST00000562662 CBY3A6NI87 242 aa9.85□□□□□ -0.83
VPS39-206ENST00000562662 A8MZ25 164 aa9.85□□□□□ -0.83
VPS39-206ENST00000562662 F2Z2F3 143 aa9.85□□□□□ -0.83
VPS39-206ENST00000562662 PRM2P04554 102 aa9.85□□□□□ -0.83
VPS39-206ENST00000562662 S100A4P26447 101 aaKnown RBP9.85□□□□□ -0.83
VPS39-206ENST00000562662 C9orf85Q96MD7 179 aa9.85□□□□□ -0.83
VPS39-206ENST00000562662 GOLT1BQ9Y3E0 138 aa9.85□□□□□ -0.83
VPS39-206ENST00000562662 MUC21A0A0G2JKD1 596 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 MUC21A0A140T8X8 626 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 RPS10P46783 165 aaKnown RBP9.84□□□□□ -0.83
VPS39-206ENST00000562662 APOC4P55056 127 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 HBBP68871 147 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 WDR73Q6P4I2 378 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 RASL11AQ6T310 242 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 ZNF705AQ6ZN79 300 aaPredicted RBP9.84□□□□□ -0.83
VPS39-206ENST00000562662 OR10AG1Q8NH19 301 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 TMEM208Q9BTX3 173 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 MDFICQ9P1T7 246 aa9.84□□□□□ -0.83
VPS39-206ENST00000562662 IGHV4-4A0A075B6R2 117 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 IGHV3OR16-12A0A075B7B8 117 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms