RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 TSSC4Q9Y5U2 329 aaPredicted RBP10.7□□□□□ -0.7
VPS9D1-202ENST00000561976 M0R381 172 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 AZU1P20160 251 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 ZFP36P26651 326 aaKnown RBP10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 EEF1AKMT3Q96AZ1 226 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 SIGMAR1Q99720 223 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 SPANXB1Q9NS25 103 aaPredicted RBP10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 SPRY2O43597 315 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 SMAGPQ0VAQ4 97 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 ETDBQ3ZM63 59 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 C9orf47Q6ZRZ4 202 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 SH2D6Q7Z4S9 175 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 MRAP2Q96G30 205 aa10.69□□□□□ -0.7
VPS9D1-202ENST00000561976 CCL21O00585 134 aa10.68□□□□□ -0.7
VPS9D1-202ENST00000561976 SCGB2A2Q13296 93 aa10.68□□□□□ -0.7
VPS9D1-202ENST00000561976 MYMXA0A1B0GTQ4 84 aa10.68□□□□□ -0.7
VPS9D1-202ENST00000561976 LINC01548A6NM66 108 aa10.68□□□□□ -0.7
VPS9D1-202ENST00000561976 MRPL53Q96EL3 112 aaKnown RBP10.68□□□□□ -0.7
VPS9D1-202ENST00000561976 CYSLTR1Q9Y271 337 aa10.68□□□□□ -0.7
VPS9D1-202ENST00000561976 SPTA1P02549 2419 aa10.68□□□□□ -0.7
VPS9D1-202ENST00000561976 IGHV4-4A0A075B6R2 117 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 S100A4P26447 101 aaKnown RBP10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 RRN3P1Q2M238 152 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 GAGE13Q4V321 117 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 ORMDL2Q53FV1 153 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 TRAV12-1A0A0B4J245 112 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 GAGE12HA6NDE8 117 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 CD300EQ496F6 205 aaPredicted RBP10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 PRR9Q5T870 116 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 LCNL1Q6ZST4 164 aa10.67□□□□□ -0.7
VPS9D1-202ENST00000561976 TRBV7-3A0A075B6L6 115 aa10.66□□□□□ -0.7
VPS9D1-202ENST00000561976 IGF1P05019 195 aa10.66□□□□□ -0.7
VPS9D1-202ENST00000561976 SUMO2P61956 95 aaKnown RBP10.66□□□□□ -0.7
VPS9D1-202ENST00000561976 RAXQ9Y2V3 346 aa10.66□□□□□ -0.7
VPS9D1-202ENST00000561976 MGPP08493 103 aa10.66□□□□□ -0.7
VPS9D1-202ENST00000561976 TRBV7-1A0A0A6YYK4 115 aa10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 CDSNQ15517 529 aa10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 FBXL19-AS1Q494R0 122 aa10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 C14orf178Q8N769 122 aaPredicted RBP10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 RPL39LQ96EH5 51 aaKnown RBP10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 SIRPDQ9H106 197 aa10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 TCF15Q12870 199 aa10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 TOMM6Q96B49 74 aa10.65□□□□□ -0.7
VPS9D1-202ENST00000561976 NBASA2RRP1 2371 aa10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 A0A1B0GV72 72 aa10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 HOXA3O43365 443 aaPredicted RBP10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 SAA4P35542 130 aa10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 ATP5G2Q06055 141 aa10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 RASL10AQ92737 203 aa10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 SPAG8Q99932 426 aaPredicted RBP10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 PHLDA3Q9Y5J5 127 aa10.65□□□□□ -0.71
VPS9D1-202ENST00000561976 C11orf71Q6IPW1 123 aa10.64□□□□□ -0.71
VPS9D1-202ENST00000561976 NEXN-AS1Q8NBZ9 246 aa10.64□□□□□ -0.71
VPS9D1-202ENST00000561976 TMEM95Q3KNT9 176 aa10.64□□□□□ -0.71
VPS9D1-202ENST00000561976 C2orf66Q6UXQ4 117 aa10.64□□□□□ -0.71
VPS9D1-202ENST00000561976 SCGB1D4Q6XE38 83 aa10.64□□□□□ -0.71
VPS9D1-202ENST00000561976 C20orf173Q96LM9 149 aa10.64□□□□□ -0.71
VPS9D1-202ENST00000561976 DPH3P1Q9H4G8 78 aa10.64□□□□□ -0.71
VPS9D1-202ENST00000561976 LGALS1P09382 135 aaKnown RBP10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 SLC25A16P16260 332 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 UBE2E1P51965 193 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 PRADC1Q9BSG0 188 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 LINC00527Q9UJ94 153 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 A0A1B0GWB2 263 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 ASIPP42127 132 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 C9orf139Q6ZV77 190 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 OR10J6PQ8NGY7 276 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 BAALCQ8WXS3 180 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 C20orf78Q9BR46 151 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 MRPL16Q9NX20 251 aaKnown RBP10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 PGPEP1Q9NXJ5 209 aa10.63□□□□□ -0.71
VPS9D1-202ENST00000561976 TRAV21A0A0B4J279 112 aa10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 ZNF815PA8K554 130 aa10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 U3KQE9 123 aa10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 SCGB1A1P11684 91 aa10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 DEFB1P60022 68 aa10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 SRSF9Q13242 221 aaKnown RBP eCLIP10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 LINC00477Q96M19 166 aa10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 PTPRZ1P23471 2315 aaPredicted RBP10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 SPTBN1Q01082 2364 aaKnown RBP10.62□□□□□ -0.71
VPS9D1-202ENST00000561976 RELNP78509 3460 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 PRSS29PA6NIE9 313 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 LINC01619G3V211 115 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 KLK9Q2XQG4 91 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 KLK9Q9UKQ9 250 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 LENEPQ9Y5L5 61 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 CENPVL3A0A0U1RRI6 287 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 K7ENP7 123 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 INSL3P51460 131 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 RPL11P62913 178 aaKnown RBP10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 FOXC1Q12948 553 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 ANXA2RQ3ZCQ2 193 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 SFTA2Q6UW10 78 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 TMEM219Q86XT9 240 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 AJUBAQ96IF1 538 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 CEP295Q9C0D2 2601 aa10.61□□□□□ -0.71
VPS9D1-202ENST00000561976 RNASE4P34096 147 aaKnown RBP10.6□□□□□ -0.71
VPS9D1-202ENST00000561976 MORN3Q6PF18 240 aaPredicted RBP10.6□□□□□ -0.71
VPS9D1-202ENST00000561976 ZFAND2AQ8N6M9 145 aa10.6□□□□□ -0.71
VPS9D1-202ENST00000561976 GLMPQ8WWB7 406 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms