RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SDF2L1Q9HCN8 221 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 PRO0255Q9UI72 69 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 TRAV34A0A0B4J273 112 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 IGHV3-16A0A0C4DH30 117 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 GCGP01275 180 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 IFNA7P01567 189 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 CRYBA4P53673 196 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 RASL10AQ92737 203 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 ZNF479Q96JC4 524 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 KCNS1Q96KK3 526 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 HHLA3Q9XRX5 114 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 ICOSQ9Y6W8 199 aa10.83□□□□□ -0.68
VPS39-203ENST00000561797 MAP1LC3B2A6NCE7 125 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 ZFP69Q49AA0 526 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 SMUG1Q53HV7 270 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 KCNRGQ8N5I3 272 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 TMEM75Q8N9X5 138 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 OR11H4Q8NGC9 324 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 LINC00479Q96M42 142 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 MAP1LC3BQ9GZQ8 125 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 C11orf21Q9P2W6 132 aa10.82□□□□□ -0.68
VPS39-203ENST00000561797 MRPS16Q9Y3D3 137 aaKnown RBP10.82□□□□□ -0.68
VPS39-203ENST00000561797 FAM74A7A6NL05 159 aa10.81□□□□□ -0.68
VPS39-203ENST00000561797 M0R2P5 195 aa10.81□□□□□ -0.68
VPS39-203ENST00000561797 SLAQ13239 276 aa10.81□□□□□ -0.68
VPS39-203ENST00000561797 C6orf223Q8N319 242 aa10.81□□□□□ -0.68
VPS39-203ENST00000561797 PFN1P07737 140 aaKnown RBP10.8□□□□□ -0.68
VPS39-203ENST00000561797 ZNF345Q14585 488 aa10.8□□□□□ -0.68
VPS39-203ENST00000561797 SAPCD1Q5SSQ6 148 aa10.8□□□□□ -0.68
VPS39-203ENST00000561797 OR4C5Q8NGB2 326 aa10.8□□□□□ -0.68
VPS39-203ENST00000561797 UPK3BQ9BT76 320 aa10.8□□□□□ -0.68
VPS39-203ENST00000561797 TRAV4A0A0B4J268 109 aa10.79□□□□□ -0.68
VPS39-203ENST00000561797 FBLL1A6NHQ2 334 aaKnown RBP10.79□□□□□ -0.68
VPS39-203ENST00000561797 HMSDA8MTL9 139 aa10.79□□□□□ -0.68
VPS39-203ENST00000561797 C9JCJ5 164 aa10.79□□□□□ -0.68
VPS39-203ENST00000561797 PEX7O00628 323 aa10.79□□□□□ -0.68
VPS39-203ENST00000561797 FHITP49789 147 aa10.79□□□□□ -0.68
VPS39-203ENST00000561797 MRPL23Q16540 153 aaKnown RBP10.79□□□□□ -0.68
VPS39-203ENST00000561797 ZNF471Q9BX82 626 aaPredicted RBP10.79□□□□□ -0.68
VPS39-203ENST00000561797 ARL2-SNX15V9GYD0 113 aa10.79□□□□□ -0.68
VPS39-203ENST00000561797 A0A0D9SG52 128 aa10.78□□□□□ -0.68
VPS39-203ENST00000561797 KANTRA0A1W2PQU2 76 aa10.78□□□□□ -0.68
VPS39-203ENST00000561797 PPT1P50897 306 aa10.78□□□□□ -0.68
VPS39-203ENST00000561797 STOML3Q8TAV4 291 aa10.78□□□□□ -0.68
VPS39-203ENST00000561797 KRTAP1-5Q9BYS1 174 aa10.78□□□□□ -0.68
VPS39-203ENST00000561797 NKX6-2Q9C056 277 aaPredicted RBP10.78□□□□□ -0.68
VPS39-203ENST00000561797 BCL2L11O43521 198 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 SEC11BP0C7V7 166 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 GYPEP15421 78 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 TNP2Q05952 138 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 TTC32Q5I0X7 151 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 CST9LP1Q5W188 147 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 FAM213BQ8TBF2 198 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 PCNPQ8WW12 178 aaKnown RBP10.77□□□□□ -0.69
VPS39-203ENST00000561797 HIST1H2BAQ96A08 127 aa10.77□□□□□ -0.69
VPS39-203ENST00000561797 A0A1B0GV50 99 aa10.76□□□□□ -0.69
VPS39-203ENST00000561797 K7EQD1 137 aa10.76□□□□□ -0.69
VPS39-203ENST00000561797 SRIP30626 198 aa10.76□□□□□ -0.69
VPS39-203ENST00000561797 ZNF876PQ49A33 203 aa10.76□□□□□ -0.69
VPS39-203ENST00000561797 LYPD5Q6UWN5 251 aa10.76□□□□□ -0.69
VPS39-203ENST00000561797 NEGR1Q7Z3B1 354 aa10.76□□□□□ -0.69
VPS39-203ENST00000561797 Q86TA4 180 aa10.76□□□□□ -0.69
VPS39-203ENST00000561797 FABP5P3A8MUU1 101 aa10.75□□□□□ -0.69
VPS39-203ENST00000561797 SIVA1O15304 175 aa10.75□□□□□ -0.69
VPS39-203ENST00000561797 PFDN1O60925 122 aa10.75□□□□□ -0.69
VPS39-203ENST00000561797 NXPH4O95158 308 aa10.75□□□□□ -0.69
VPS39-203ENST00000561797 TMUB2Q71RG4 321 aa10.75□□□□□ -0.69
VPS39-203ENST00000561797 SFT2D1Q8WV19 159 aa10.75□□□□□ -0.69
VPS39-203ENST00000561797 C9orf85Q96MD7 179 aa10.75□□□□□ -0.69
VPS39-203ENST00000561797 DNAH17Q9UFH2 4485 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 LOC100131303A0A0U1RQF7 123 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 PGPEP1LA6NFU8 196 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 UMAD1C9J7I0 102 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 PAGE4O60829 102 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 ORM1P02763 201 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 RNASE3P12724 160 aaKnown RBP10.74□□□□□ -0.69
VPS39-203ENST00000561797 UBE2G1P62253 170 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 DPPA3Q6W0C5 159 aa10.74□□□□□ -0.69
VPS39-203ENST00000561797 IGHV3-73A0A0B4J1V6 119 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 IGKV3D-20A0A0C4DH25 116 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 A0A1W2PPQ1 181 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 RS1O15537 224 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 S100A4P26447 101 aaKnown RBP10.73□□□□□ -0.69
VPS39-203ENST00000561797 EIF5AP63241 154 aaKnown RBP10.73□□□□□ -0.69
VPS39-203ENST00000561797 ZNF506Q5JVG8 444 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 MBD3L1Q8WWY6 194 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 ZC2HC1AQ96GY0 325 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 FMC1Q96HJ9 113 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 DNAH2Q9P225 4427 aa10.73□□□□□ -0.69
VPS39-203ENST00000561797 GATA1P15976 413 aaPredicted RBP10.72□□□□□ -0.69
VPS39-203ENST00000561797 AKR1C3P42330 323 aa10.72□□□□□ -0.69
VPS39-203ENST00000561797 CFAP126Q5VTH2 177 aa10.72□□□□□ -0.69
VPS39-203ENST00000561797 ZNF575Q86XF7 245 aa10.72□□□□□ -0.69
VPS39-203ENST00000561797 TXNDC17Q9BRA2 123 aa10.72□□□□□ -0.69
VPS39-203ENST00000561797 ZFP30Q9Y2G7 519 aa10.72□□□□□ -0.69
VPS39-203ENST00000561797 B4DEV8 164 aa10.71□□□□□ -0.69
VPS39-203ENST00000561797 M0R036 132 aa10.71□□□□□ -0.69
VPS39-203ENST00000561797 SH2D1AO60880 128 aa10.71□□□□□ -0.69
VPS39-203ENST00000561797 TPT1P13693 172 aaKnown RBP10.71□□□□□ -0.69
VPS39-203ENST00000561797 ASIPP42127 132 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms