RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 BTF3L4Q96K17 158 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 C8orf49Q96NF6 230 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 TMEM208Q9BTX3 173 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 RPP21Q9H633 154 aaKnown RBP8.65□□□□□ -1.02
LDLR-212ENST00000560467 C7orf71A4D174 169 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 K7EN84 100 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 INSP01308 110 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 APOC4P55056 127 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 FAM159AQ6UWV7 190 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 DEFB125Q8N687 156 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 NUDT10Q8NFP7 164 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 OR2D3Q8NGH3 330 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 NUDT11Q96G61 164 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 KCNS1Q96KK3 526 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 RNASE7Q9H1E1 156 aaKnown RBP8.64□□□□□ -1.03
LDLR-212ENST00000560467 HERC2O95714 4834 aa8.64□□□□□ -1.03
LDLR-212ENST00000560467 SH2D1AO60880 128 aa8.63□□□□□ -1.03
LDLR-212ENST00000560467 SPINK13Q1W4C9 94 aa8.63□□□□□ -1.03
LDLR-212ENST00000560467 LINC00476Q8WZB0 136 aa8.63□□□□□ -1.03
LDLR-212ENST00000560467 IMMP2LQ96T52 175 aa8.63□□□□□ -1.03
LDLR-212ENST00000560467 C20orf144Q9BQM9 153 aa8.63□□□□□ -1.03
LDLR-212ENST00000560467 SRD5A3Q9H8P0 318 aa8.63□□□□□ -1.03
LDLR-212ENST00000560467 NAGKQ9UJ70 344 aa8.63□□□□□ -1.03
LDLR-212ENST00000560467 LOC102724200A0A096LPH7 203 aaPredicted RBP8.62□□□□□ -1.03
LDLR-212ENST00000560467 TRAV12-3A0A0B4J271 114 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 KLLNB2CW77 178 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 M0R2Z0 102 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 RPL35AP18077 110 aaKnown RBP8.62□□□□□ -1.03
LDLR-212ENST00000560467 ZNF124Q15973 351 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 CT83Q5H943 113 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 Q6AWC8 147 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 TRPT1Q86TN4 253 aaKnown RBP8.62□□□□□ -1.03
LDLR-212ENST00000560467 TMEM256Q8N2U0 113 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 ZFAND2AQ8N6M9 145 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 FAM19A4Q96LR4 140 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 CSTL1Q9H114 145 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 GOLT1BQ9Y3E0 138 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 FRAS1Q86XX4 4008 aa8.62□□□□□ -1.03
LDLR-212ENST00000560467 C19orf71A6NCJ1 209 aa8.61□□□□□ -1.03
LDLR-212ENST00000560467 FAM231BA6NCW3 169 aa8.61□□□□□ -1.03
LDLR-212ENST00000560467 A8MTW9 85 aa8.61□□□□□ -1.03
LDLR-212ENST00000560467 S100A4P26447 101 aaKnown RBP8.61□□□□□ -1.03
LDLR-212ENST00000560467 TSKUQ8WUA8 353 aa8.61□□□□□ -1.03
LDLR-212ENST00000560467 LINC01587Q99440 93 aa8.61□□□□□ -1.03
LDLR-212ENST00000560467 TRAV12-2A0A075B6T6 113 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 KIR2DL5BA0A0G2JN68 375 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 KIR2DL5BA0A0G2JPC4 375 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 A0A1W2PPQ1 181 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 LY6G6CO95867 125 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 FXYD7P58549 80 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 BTN1A1Q13410 526 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 GFI1BQ5VTD9 330 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 AMTNQ6UX39 209 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 KIR2DL5AQ8N109 375 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 KIR2DL5BQ8NHK3 375 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 GFRA4Q9GZZ7 299 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 IL36BQ9NZH7 164 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 XCL2Q9UBD3 114 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 NAT8BQ9UHF3 227 aa8.6□□□□□ -1.03
LDLR-212ENST00000560467 TRGV11A0A075B6L2 103 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 TMSB15BA0A087X1C1 80 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 F2Z2F3 143 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 UBE2CO00762 179 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 CA1P00915 261 aaPredicted RBP8.59□□□□□ -1.03
LDLR-212ENST00000560467 ASIPP42127 132 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 CRIP1P50238 77 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 ZNF80P51504 273 aaPredicted RBP8.59□□□□□ -1.03
LDLR-212ENST00000560467 LINC01559Q495D7 138 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 PYGO2Q9BRQ0 406 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 TPPP3Q9BW30 176 aa8.59□□□□□ -1.03
LDLR-212ENST00000560467 TRAV9-1A0A075B6T8 112 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 IGHV1OR15-1A0A075B7D0 117 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 CBY3A6NI87 242 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 S100A8P05109 93 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 HTN1P15515 57 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 MUC21Q5SSG8 566 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 ATRAIDQ6UW56 229 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 V9GYV3 84 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 KMT2AQ03164 3969 aa8.58□□□□□ -1.04
LDLR-212ENST00000560467 IGHV3OR16-12A0A075B7B8 117 aa8.57□□□□□ -1.04
LDLR-212ENST00000560467 CXCL1P09341 107 aa8.57□□□□□ -1.04
LDLR-212ENST00000560467 TCL1AP56279 114 aa8.57□□□□□ -1.04
LDLR-212ENST00000560467 TMEM88Q6PEY1 159 aa8.57□□□□□ -1.04
LDLR-212ENST00000560467 SMIM15Q7Z3B0 74 aa8.57□□□□□ -1.04
LDLR-212ENST00000560467 OVOL2Q9BRP0 275 aa8.57□□□□□ -1.04
LDLR-212ENST00000560467 URGCP-MRPS24S4R325 110 aa8.57□□□□□ -1.04
LDLR-212ENST00000560467 DNAH10Q8IVF4 4471 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 A0A1B0GW15 77 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 SMIM27A0A1W2PRY6 76 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 ZNF324O75467 553 aaPredicted RBP8.56□□□□□ -1.04
LDLR-212ENST00000560467 RIGQ13278 110 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 TDRG1Q3Y452 100 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 ANXA2RQ3ZCQ2 193 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 COX19Q49B96 90 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 PRR9Q5T870 116 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 FER1L6-AS1Q8NA97 138 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 NEU1Q99519 415 aa8.56□□□□□ -1.04
LDLR-212ENST00000560467 GRIFINA4D1Z8 144 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 HIGD1CA8MV81 97 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 FAM3BP58499 235 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms