RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SMIM12Q96EX1 92 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 COX11Q9Y6N1 276 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 OR4C46A6NHA9 309 aa8.39□□□□□ -1.07
USP3-218ENST00000560202 MGST1P10620 155 aaKnown RBP8.39□□□□□ -1.07
USP3-218ENST00000560202 DEFB1P60022 68 aa8.39□□□□□ -1.07
USP3-218ENST00000560202 BATFQ16520 125 aa8.39□□□□□ -1.07
USP3-218ENST00000560202 C9orf47Q6ZRZ4 202 aa8.39□□□□□ -1.07
USP3-218ENST00000560202 ASCL2Q99929 193 aa8.39□□□□□ -1.07
USP3-218ENST00000560202 MLST8Q9BVC4 326 aa8.39□□□□□ -1.07
USP3-218ENST00000560202 AGPAT4-IT1Q9H0P7 198 aa8.39□□□□□ -1.07
USP3-218ENST00000560202 MRPL18Q9H0U6 180 aaKnown RBP8.39□□□□□ -1.07
USP3-218ENST00000560202 F6UB75 175 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 NUPR1O60356 82 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 SPATA45Q537H7 98 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 TMEM78Q5T7P6 136 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 OR8A1Q8NGG7 326 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 OR2K2Q8NGT1 345 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 OR10J6PQ8NGY7 276 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 SPATA3Q8NHX4 192 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 Q8TAT8 98 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 KCNS1Q96KK3 526 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 KRTAP3-3Q9BYR6 98 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 KRTAP3-2Q9BYR7 98 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 TP53TG3Q9ULZ0 132 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 WNK1Q9H4A3 2382 aa8.38□□□□□ -1.07
USP3-218ENST00000560202 NPIPB6E9PJ23 425 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 CCL25O15444 150 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 HIST1H1AQ02539 215 aaPredicted RBP8.37□□□□□ -1.07
USP3-218ENST00000560202 Q6ZN92 141 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 LINC00477Q96M19 166 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 PRR25Q96S07 402 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 ALKBH7Q9BT30 221 aaPredicted RBP8.37□□□□□ -1.07
USP3-218ENST00000560202 ZNF256Q9Y2P7 627 aaPredicted RBP8.37□□□□□ -1.07
USP3-218ENST00000560202 INSL3P51460 131 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 ZNF138P52744 262 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 LINC00310P59036 64 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 DEFB131AP59861 70 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 RASL11AQ6T310 242 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 WFDC9Q8NEX5 89 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 RNASE8Q8TDE3 154 aaKnown RBP8.37□□□□□ -1.07
USP3-218ENST00000560202 NDFIP1Q9BT67 221 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 ZNF492Q9P255 531 aa8.37□□□□□ -1.07
USP3-218ENST00000560202 CD33P20138 364 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 FAM162BQ5T6X4 162 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 C9orf66Q5T8R8 295 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 GDF5OSQ5U4N7 250 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 PRR27Q6MZM9 219 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 EBLN2Q6P2I7 272 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 COX8CQ7Z4L0 72 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 STPG4Q8N801 248 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 Q8N976 141 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 ZC2HC1AQ96GY0 325 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 C8orf49Q96NF6 230 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 MAP6D1Q9H9H5 199 aa8.36□□□□□ -1.07
USP3-218ENST00000560202 A0A0J9YX75 114 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 HLA-DQA1P01909 254 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 CT45A10P0DMU9 189 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 TSPOP30536 169 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 KRTDAPP60985 99 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 TDRG1Q3Y452 100 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 FOXI2Q6ZQN5 318 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 OR4C5Q8NGB2 326 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 MCRIP2Q9BUT9 160 aaKnown RBP8.35□□□□□ -1.07
USP3-218ENST00000560202 RNASE7Q9H1E1 156 aaKnown RBP8.35□□□□□ -1.07
USP3-218ENST00000560202 OSTCQ9NRP0 149 aa8.35□□□□□ -1.07
USP3-218ENST00000560202 CHTOPQ9Y3Y2 248 aaKnown RBP8.35□□□□□ -1.07
USP3-218ENST00000560202 GRIFINA4D1Z8 144 aa8.34□□□□□ -1.07
USP3-218ENST00000560202 ZNF324O75467 553 aaPredicted RBP8.34□□□□□ -1.07
USP3-218ENST00000560202 IBA57Q5T440 356 aaKnown RBP8.34□□□□□ -1.07
USP3-218ENST00000560202 LINC00322Q6ZN03 302 aaPredicted RBP8.34□□□□□ -1.07
USP3-218ENST00000560202 FAM231DQ6ZW35 169 aa8.34□□□□□ -1.07
USP3-218ENST00000560202 BORCS7Q96B45 105 aa8.34□□□□□ -1.07
USP3-218ENST00000560202 LENEPQ9Y5L5 61 aa8.34□□□□□ -1.07
USP3-218ENST00000560202 VWFP04275 2813 aa8.34□□□□□ -1.07
USP3-218ENST00000560202 KNCNA6PVL3 124 aa8.34□□□□□ -1.08
USP3-218ENST00000560202 DUSP14O95147 198 aaKnown RBP8.34□□□□□ -1.08
USP3-218ENST00000560202 AMTP48728 403 aa8.34□□□□□ -1.08
USP3-218ENST00000560202 CRIP1P50238 77 aa8.34□□□□□ -1.08
USP3-218ENST00000560202 BEAN1Q3B7T3 259 aa8.34□□□□□ -1.08
USP3-218ENST00000560202 ODF3L2Q3SX64 289 aa8.34□□□□□ -1.08
USP3-218ENST00000560202 NUDT10Q8NFP7 164 aa8.34□□□□□ -1.08
USP3-218ENST00000560202 NUDT11Q96G61 164 aa8.34□□□□□ -1.08
USP3-218ENST00000560202 TRAV9-2A0A087WT02 112 aa8.33□□□□□ -1.08
USP3-218ENST00000560202 C19orf71A6NCJ1 209 aa8.33□□□□□ -1.08
USP3-218ENST00000560202 SNURFLB1AK76 121 aa8.33□□□□□ -1.08
USP3-218ENST00000560202 CMC4P56277 68 aaPredicted RBP8.33□□□□□ -1.08
USP3-218ENST00000560202 APRG1Q8IVJ8 170 aa8.33□□□□□ -1.08
USP3-218ENST00000560202 DAZAP1Q96EP5 407 aaKnown RBP8.33□□□□□ -1.08
USP3-218ENST00000560202 FAM19A4Q96LR4 140 aa8.33□□□□□ -1.08
USP3-218ENST00000560202 TRBV7-9A0A0J9YWB2 115 aa8.32□□□□□ -1.08
USP3-218ENST00000560202 OR11H12B2RN74 326 aa8.32□□□□□ -1.08
USP3-218ENST00000560202 K7ERU9 68 aa8.32□□□□□ -1.08
USP3-218ENST00000560202 HLA-DRB4P13762 266 aa8.32□□□□□ -1.08
USP3-218ENST00000560202 IGLL1P15814 213 aa8.32□□□□□ -1.08
USP3-218ENST00000560202 ZNF80P51504 273 aaPredicted RBP8.32□□□□□ -1.08
USP3-218ENST00000560202 V9GYV3 84 aa8.32□□□□□ -1.08
USP3-218ENST00000560202 HLA-DRB4X5D2U9 266 aa8.32□□□□□ -1.08
USP3-218ENST00000560202 H3BMM0 161 aa8.31□□□□□ -1.08
USP3-218ENST00000560202 CIDEAO60543 219 aa8.31□□□□□ -1.08
USP3-218ENST00000560202 SH2D1AO60880 128 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms