RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SPXQ9BT56 116 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 NAT8Q9UHE5 227 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 IGHV4-28A0A0C4DH34 117 aa6.66□□□□□ -1.34
LDLR-210ENST00000559340 B4DEV8 164 aa6.66□□□□□ -1.34
LDLR-210ENST00000559340 P01737 135 aa6.66□□□□□ -1.34
LDLR-210ENST00000559340 SFTA3P0C7M3 94 aa6.66□□□□□ -1.34
LDLR-210ENST00000559340 SPART-AS1P0CW21 52 aa6.66□□□□□ -1.34
LDLR-210ENST00000559340 S100A4P26447 101 aaKnown RBP6.66□□□□□ -1.34
LDLR-210ENST00000559340 SRSF3P84103 164 aaKnown RBP6.66□□□□□ -1.34
LDLR-210ENST00000559340 NDUFA5Q16718 116 aa6.66□□□□□ -1.34
LDLR-210ENST00000559340 Q8NAQ8 132 aa6.66□□□□□ -1.34
LDLR-210ENST00000559340 TIMM8BQ9Y5J9 83 aaPredicted RBP6.66□□□□□ -1.34
LDLR-210ENST00000559340 NACAE9PAV3 2078 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 TRBV20OR9-2A0A075B6H5 130 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 CXorf65A6NEN9 183 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 LYRM9A8MSI8 78 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 C9JQL5 133 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 IGLV2-8P01709 118 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 CXCL1P09341 107 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 ASIPP42127 132 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 CRIP1P50238 77 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 EMP1P54849 157 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 TCL1AP56279 114 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 PNRC1Q12796 327 aaPredicted RBP6.65□□□□□ -1.34
LDLR-210ENST00000559340 LINC01559Q495D7 138 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 FAM231DQ6ZW35 169 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 C15orf54Q8N8G6 183 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 RNASE8Q8TDE3 154 aaKnown RBP6.65□□□□□ -1.34
LDLR-210ENST00000559340 TP53TG3Q9ULZ0 132 aa6.65□□□□□ -1.34
LDLR-210ENST00000559340 MUC4Q99102 2169 aa6.65□□□□□ -1.35
LDLR-210ENST00000559340 A0A0J9YWU9 116 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 TMEM218A2RU14 115 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 KRBOX1C9JBD0 128 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 F8W036 122 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 GNRH2O43555 120 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 GATCO43716 136 aaKnown RBP6.64□□□□□ -1.35
LDLR-210ENST00000559340 TYMSP04818 313 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 AZU1P20160 251 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 ERVFC1-1P60608 527 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 DAZ2Q13117 558 aaKnown RBP6.64□□□□□ -1.35
LDLR-210ENST00000559340 LGALS9BQ3B8N2 356 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 DNLZQ5SXM8 178 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 LINC01551Q86U37 167 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 OR2D3Q8NGH3 330 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 C11orf45Q8TAV5 145 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 OSTCQ9NRP0 149 aa6.64□□□□□ -1.35
LDLR-210ENST00000559340 DNAH9Q9NYC9 4486 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 IGKV3D-20A0A0C4DH25 116 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 IGHV3-16A0A0C4DH30 117 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 C19orf71A6NCJ1 209 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 PGPEP1LA6NFU8 196 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 A8MWL6 223 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 M0R036 132 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 M0R2P5 195 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 DEFB4AO15263 64 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 MED14OSP0DP75 135 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 RPL23P62829 140 aaKnown RBP6.63□□□□□ -1.35
LDLR-210ENST00000559340 ADIRFQ15847 76 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 Q6ZQT7 251 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 NUDT10Q8NFP7 164 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 NUDT11Q96G61 164 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 SEC11CQ9BY50 192 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 NOP10Q9NPE3 64 aaKnown RBP6.63□□□□□ -1.35
LDLR-210ENST00000559340 GSN-AS1Q9NRJ2 163 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 IL36BQ9NZH7 164 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 C11orf21Q9P2W6 132 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 DKK2Q9UBU2 259 aa6.63□□□□□ -1.35
LDLR-210ENST00000559340 TMSB15BA0A087X1C1 80 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 A0A1W2PPQ1 181 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 K7EN84 100 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 PPP1R2P9O14990 202 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 PRM2P04554 102 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 DAD1P61803 113 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 CT83Q5H943 113 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 FAM222AQ5U5X8 452 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 C11orf72Q8NBR9 251 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 SYT8Q8NBV8 401 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 OR10G8Q8NGN5 311 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 PTH2Q96A98 100 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 ISOC2Q96AB3 205 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 NDUFAF3Q9BU61 184 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 RPP21Q9H633 154 aaKnown RBP6.62□□□□□ -1.35
LDLR-210ENST00000559340 PHLDA3Q9Y5J5 127 aa6.62□□□□□ -1.35
LDLR-210ENST00000559340 TENM3Q9P273 2699 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 TRGV1A0A0A0MS02 117 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 GRIFINA4D1Z8 144 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 F2Z2F3 143 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 CIDEAO60543 219 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 SPINK4O60575 86 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 MT-ND4LP03901 98 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 ARMS2P0C7Q2 107 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 PIK3CD-AS1Q5SR53 167 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 SFRP2Q96HF1 295 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 WWC2-AS2Q96NR7 200 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 RNASE7Q9H1E1 156 aaKnown RBP6.61□□□□□ -1.35
LDLR-210ENST00000559340 EDA2RQ9HAV5 297 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 MDFICQ9P1T7 246 aa6.61□□□□□ -1.35
LDLR-210ENST00000559340 TRGV2A0A075B6R0 118 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 PLAC8L1A1L4L8 177 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 FAM231BA6NCW3 169 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms