RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 IGKV3D-20A0A0C4DH25 116 aa8.77□□□□□ -1.01
LDLR-208ENST00000558518 TMEM170BQ5T4T1 132 aa8.77□□□□□ -1.01
LDLR-208ENST00000558518 FAM74A4Q5TZK3 123 aa8.77□□□□□ -1.01
LDLR-208ENST00000558518 RAX2Q96IS3 184 aa8.77□□□□□ -1.01
LDLR-208ENST00000558518 PRTN3P24158 256 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 Q1RN00 199 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 ZNF672Q499Z4 452 aaPredicted RBP8.76□□□□□ -1.01
LDLR-208ENST00000558518 LINC01548A6NM66 108 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 CTSGP08311 255 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 PHLDA3Q9Y5J5 127 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 F6UB75 175 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 SCGB2A1O75556 95 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 C16orf54Q6UWD8 224 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 TMEM219Q86XT9 240 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 Q8N8P6 123 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 DPF1Q92782 380 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 TNFRSF14Q92956 283 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 GEMIN7Q9H840 131 aaKnown RBP8.76□□□□□ -1.01
LDLR-208ENST00000558518 U3KQK5 164 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 MYO9AB2RTY4 2548 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 WNK1Q9H4A3 2382 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 ZNF292O60281 2723 aa8.76□□□□□ -1.01
LDLR-208ENST00000558518 USP9YO00507 2555 aaPredicted RBP8.76□□□□□ -1.01
LDLR-208ENST00000558518 MRPS12O15235 138 aaKnown RBP8.75□□□□□ -1.01
LDLR-208ENST00000558518 HOXB4P17483 251 aaPredicted RBP8.75□□□□□ -1.01
LDLR-208ENST00000558518 SRSF1Q07955 248 aaKnown RBP eCLIP8.75□□□□□ -1.012e-6■■□□□ 14.5
LDLR-208ENST00000558518 PLA2G2CQ5R387 149 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 PRADC1Q9BSG0 188 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 SPTBN4Q9H254 2564 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 F8W1H4 67 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 IGHV3-11P01762 117 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 IGLC6P0CF74 106 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 HTN1P15515 57 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 RRN3P1Q2M238 152 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 CENPEQ02224 2701 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 E9PLD3 99 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 PLEKHB2Q96CS7 222 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 UBTD1Q9HAC8 227 aa8.75□□□□□ -1.01
LDLR-208ENST00000558518 SHISA9B4DS77 424 aa8.74□□□□□ -1.01
LDLR-208ENST00000558518 CEACAM4O75871 244 aa8.74□□□□□ -1.01
LDLR-208ENST00000558518 MT-ATP8P03928 68 aa8.74□□□□□ -1.01
LDLR-208ENST00000558518 RNASE4P34096 147 aaKnown RBP8.74□□□□□ -1.01
LDLR-208ENST00000558518 PDE6HQ13956 83 aa8.74□□□□□ -1.01
LDLR-208ENST00000558518 IGFL2Q6UWQ7 119 aa8.74□□□□□ -1.01
LDLR-208ENST00000558518 TLN2Q9Y4G6 2542 aa8.74□□□□□ -1.01
LDLR-208ENST00000558518 Q6ZS92 163 aa8.74□□□□□ -1.01
LDLR-208ENST00000558518 ZNF256Q9Y2P7 627 aaPredicted RBP8.74□□□□□ -1.01
LDLR-208ENST00000558518 A0A087WX48 190 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 MYMXA0A1B0GTQ4 84 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 KIR2DL4Q99706 377 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 IGLV11-55A0A075B6I3 123 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 A0A087WWL8 130 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 CRYBA4P53673 196 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 PHLDA1Q8WV24 401 aaPredicted RBP8.73□□□□□ -1.01
LDLR-208ENST00000558518 TIMD4Q96H15 378 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 H7C1H1 209 aa8.73□□□□□ -1.01
LDLR-208ENST00000558518 IGHG4P01861 327 aa8.72□□□□□ -1.01
LDLR-208ENST00000558518 NPC2P61916 151 aa8.72□□□□□ -1.01
LDLR-208ENST00000558518 C2orf66Q6UXQ4 117 aa8.72□□□□□ -1.01
LDLR-208ENST00000558518 SONP18583 2426 aaKnown RBP8.72□□□□□ -1.01
LDLR-208ENST00000558518 GNRH2O43555 120 aa8.72□□□□□ -1.01
LDLR-208ENST00000558518 F8VRH5 84 aa8.72□□□□□ -1.01
LDLR-208ENST00000558518 F8W735 103 aaPredicted RBP8.72□□□□□ -1.01
LDLR-208ENST00000558518 ATP6V0E1O15342 81 aa8.72□□□□□ -1.01
LDLR-208ENST00000558518 PAX8Q06710 450 aa8.72□□□□□ -1.01
LDLR-208ENST00000558518 PRSS29PA6NIE9 313 aa8.71□□□□□ -1.01
LDLR-208ENST00000558518 B9A039 149 aa8.71□□□□□ -1.01
LDLR-208ENST00000558518 VMO1Q7Z5L0 202 aa8.71□□□□□ -1.01
LDLR-208ENST00000558518 METTL26Q96S19 204 aa8.71□□□□□ -1.01
LDLR-208ENST00000558518 TM2D2Q9BX73 214 aa8.71□□□□□ -1.01
LDLR-208ENST00000558518 JPT2Q9H910 190 aa8.71□□□□□ -1.01
LDLR-208ENST00000558518 RPL39P62891 51 aaKnown RBP8.71□□□□□ -1.02
LDLR-208ENST00000558518 HIGD1BQ9P298 99 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 KAAG1Q9UBP8 84 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 HIVEP3Q5T1R4 2406 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 DUSP14O95147 198 aaKnown RBP8.71□□□□□ -1.02
LDLR-208ENST00000558518 IGHV4-39P01824 125 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 LGALS1P09382 135 aaKnown RBP8.71□□□□□ -1.02
LDLR-208ENST00000558518 PLNP26678 52 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 C8orf86Q6ZUL3 223 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 DLX4Q92988 240 aaPredicted RBP8.71□□□□□ -1.02
LDLR-208ENST00000558518 SMIM2Q9BVW6 85 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 SS18L2Q9UHA2 77 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 SMPXQ9UHP9 88 aa8.71□□□□□ -1.02
LDLR-208ENST00000558518 ADARB2-AS1A8MUL3 147 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 CCL21O00585 134 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 PRSS2P07478 247 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 LINC00477Q96M19 166 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 TRAV2A0A0B4J234 112 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 SUMO2P61956 95 aaKnown RBP8.7□□□□□ -1.02
LDLR-208ENST00000558518 LY6EQ16553 131 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 PRR9Q5T870 116 aa8.7□□□□□ -1.02
LDLR-208ENST00000558518 FOXI1Q12951 378 aa8.69□□□□□ -1.02
LDLR-208ENST00000558518 OPRPNQ99935 248 aaPredicted RBP8.69□□□□□ -1.02
LDLR-208ENST00000558518 POLQO75417 2590 aa8.69□□□□□ -1.02
LDLR-208ENST00000558518 TRBV6-1A0A0K0K1D8 114 aa8.69□□□□□ -1.02
LDLR-208ENST00000558518 C8orf31Q8N9H6 132 aa8.69□□□□□ -1.02
LDLR-208ENST00000558518 TRBV20-1A0A075B6N2 111 aa8.69□□□□□ -1.02
LDLR-208ENST00000558518 TRAV8-2A0A0B4J237 113 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms