RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CDPF1Q6NVV7 123 aa7.53□□□□□ -1.2
CCDC88C-213ENST00000557455 CMTM2Q8TAZ6 248 aa7.53□□□□□ -1.2
CCDC88C-213ENST00000557455 MBD2Q9UBB5 411 aa7.53□□□□□ -1.2
CCDC88C-213ENST00000557455 TRAV4A0A0B4J268 109 aa7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 A0A1W2PPV4 95 aa7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 EIF3GO75821 320 aaKnown RBP eCLIP7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 RPL12P30050 165 aaKnown RBP7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 TDRG1Q3Y452 100 aa7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 WFDC10BQ8IUB3 73 aa7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 OR4C5Q8NGB2 326 aa7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 TXNDC17Q9BRA2 123 aa7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 MSRB1Q9NZV6 116 aa7.52□□□□□ -1.21
CCDC88C-213ENST00000557455 A0A087WTM6 91 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 TRAV21A0A0B4J279 112 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 EPM2AB3EWF7 344 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 M0R2P5 195 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 GNRH2O43555 120 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 DNAH10OSP0CZ25 163 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 ACOT6Q3I5F7 207 aaPredicted RBP7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 PQLC2Q6ZP29 291 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 GOLT1AQ6ZVE7 132 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 OR2T35Q8NGX2 323 aa7.51□□□□□ -1.21
CCDC88C-213ENST00000557455 IGHV3-16A0A0C4DH30 117 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 F6UZH7 168 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 SMLR1H3BR10 107 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 TYMSP04818 313 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 CRYGDP07320 174 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 C10orf126Q8N4M7 172 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 ARL6IP6Q8N6S5 226 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 KCNS1Q96KK3 526 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 WFDC1Q9HC57 220 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 SDF2L1Q9HCN8 221 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 TREM1Q9NP99 234 aa7.5□□□□□ -1.21
CCDC88C-213ENST00000557455 TRAV8-1A0A0A6YYK1 113 aa7.49□□□□□ -1.21
CCDC88C-213ENST00000557455 RAB2AP61019 212 aa7.49□□□□□ -1.21
CCDC88C-213ENST00000557455 SH2D6Q7Z4S9 175 aa7.49□□□□□ -1.21
CCDC88C-213ENST00000557455 NHLRC2Q8NBF2 726 aa7.49□□□□□ -1.21
CCDC88C-213ENST00000557455 TVP23CQ96ET8 276 aa7.49□□□□□ -1.21
CCDC88C-213ENST00000557455 LOC100131303A0A0U1RQF7 123 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 HMGB3O15347 200 aaKnown RBP7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 PPT1P50897 306 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 XGP55808 180 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 KRTAP10-1P60331 282 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 GNG5P63218 68 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 FAT1Q14517 4588 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 C9orf62Q8N4C0 152 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 OR10G9Q8NGN4 311 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 OR10G7Q8NGN6 311 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 NDFIP1Q9BT67 221 aa7.48□□□□□ -1.21
CCDC88C-213ENST00000557455 IGHV3-38A0A0C4DH36 116 aa7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 FBLL1A6NHQ2 334 aaKnown RBP7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 PSCAO43653 123 aa7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 ARL14EPLP0DKL9 152 aa7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 GATA1P15976 413 aaPredicted RBP7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 TIRAPP58753 221 aa7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 ZNF876PQ49A33 203 aa7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 SGK494Q96LW2 274 aa7.47□□□□□ -1.21
CCDC88C-213ENST00000557455 TRAV8-6A0A0B4J262 113 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 SERTM2A0A1B0GWG4 89 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 K7EQM0 130 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 PFN1P07737 140 aaKnown RBP7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 INAFM2P0DMQ5 153 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 GCSHP23434 173 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 CDC34P49427 236 aaPredicted RBP7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 NDUFA5Q16718 116 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 SLC25A29Q8N8R3 303 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 FRZBQ92765 325 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 BOLA1Q9Y3E2 137 aa7.46□□□□□ -1.22
CCDC88C-213ENST00000557455 VPS13BQ7Z7G8 4022 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 FXYD6-FXYD2A0A087WZ82 144 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 HMSDA8MTL9 139 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 G3V3Q6 166 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 TAAR5O14804 337 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 CIDEAO60543 219 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 TCRAP04437 139 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 STAG3L2P0CL84 134 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 STAG3L3P0CL85 134 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 IFITM2Q01629 132 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 RHOHQ15669 191 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 LINC01556Q5JQF7 62 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 OR10J3Q5JRS4 329 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 Q5VSD8 79 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 CFAP126Q5VTH2 177 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 C5orf17Q8NAS9 161 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 OR11H4Q8NGC9 324 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 PRADC1Q9BSG0 188 aa7.45□□□□□ -1.22
CCDC88C-213ENST00000557455 IGLV5-52A0A0A0MRZ9 124 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 IGHV3-73A0A0B4J1V6 119 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 TRBV6-4A0A1B0GX49 114 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 IBA57-AS1B1ANH7 110 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 RS1O15537 224 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 GCGP01275 180 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 GCHFRP30047 84 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 ZNF80P51504 273 aaPredicted RBP7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 HSD17B11Q8NBQ5 300 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 OR2G3Q8NGZ4 309 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 RAB24Q969Q5 203 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 C11orf21Q9P2W6 132 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 PSG8Q9UQ74 426 aa7.44□□□□□ -1.22
CCDC88C-213ENST00000557455 HERC1Q15751 4861 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms