RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 UFC1Q9Y3C8 167 aa9.69□□□□□ -0.86
SHMT2-229ENST00000557348 hDV102S1A0JD36 115 aa9.68□□□□□ -0.86
SHMT2-229ENST00000557348 M0R3E3 92 aa9.68□□□□□ -0.86
SHMT2-229ENST00000557348 CA1P00915 261 aaPredicted RBP9.68□□□□□ -0.86
SHMT2-229ENST00000557348 HLA-DRB4P13762 266 aa9.68□□□□□ -0.86
SHMT2-229ENST00000557348 MTURNQ8N3F0 131 aa9.68□□□□□ -0.86
SHMT2-229ENST00000557348 SIGLEC8Q9NYZ4 499 aa9.68□□□□□ -0.86
SHMT2-229ENST00000557348 HLA-DRB4X5D2U9 266 aa9.68□□□□□ -0.86
SHMT2-229ENST00000557348 ABCA12Q86UK0 2595 aa9.68□□□□□ -0.86
SHMT2-229ENST00000557348 TRAV8-1A0A0A6YYK1 113 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 A0A1B0GUT8 65 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 IGHV3-11P01762 117 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 ZNF493Q6ZR52 646 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 MYOZ3Q8TDC0 251 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 UBE2E2Q96LR5 201 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 IGHV3OR16-8A0A075B7F1 116 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 IGHV7-4-1A0A0J9YVY3 117 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 C8orf86Q6ZUL3 223 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 SGK494Q96LW2 274 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 SSBP4Q9BWG4 385 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-229ENST00000557348 TMEM160Q9NX00 188 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 SMPXQ9UHP9 88 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 TACC2O95359 2948 aa9.67□□□□□ -0.86
SHMT2-229ENST00000557348 SMAD7O15105 426 aaKnown RBP9.66□□□□□ -0.86
SHMT2-229ENST00000557348 APOHP02749 345 aaPredicted RBP9.66□□□□□ -0.86
SHMT2-229ENST00000557348 LGALS1P09382 135 aaKnown RBP9.66□□□□□ -0.86
SHMT2-229ENST00000557348 FGF6P10767 208 aa9.66□□□□□ -0.86
SHMT2-229ENST00000557348 SRSF2Q01130 221 aaKnown RBP9.66□□□□□ -0.86
SHMT2-229ENST00000557348 PRR25Q96S07 402 aa9.66□□□□□ -0.86
SHMT2-229ENST00000557348 APCP25054 2843 aa9.66□□□□□ -0.86
SHMT2-229ENST00000557348 FBN2P35556 2912 aa9.66□□□□□ -0.86
SHMT2-229ENST00000557348 LGALS9O00182 355 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 TRBV12-3P01733 135 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 FABP2P12104 132 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 TMEM95Q3KNT9 176 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 GTSF1Q8WW33 167 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 WFDC12Q8WWY7 111 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 ZC2HC1AQ96GY0 325 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 C16orf92Q96LL3 132 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 LENEPQ9Y5L5 61 aa9.65□□□□□ -0.86
SHMT2-229ENST00000557348 POLQO75417 2590 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 IGKV2-40A0A087WW87 121 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-229ENST00000557348 A0A1B0GV72 72 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 A0A1W2PPM0 123 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 IGKV2D-40P01614 121 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-229ENST00000557348 UNQ9165/PRO28630Q6UXU0 137 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 OVOL1O14753 267 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 TMEM78Q5T7P6 136 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 PRSS3P2Q8NHM4 247 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 U3KQK5 164 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 MYO9AB2RTY4 2548 aa9.64□□□□□ -0.87
SHMT2-229ENST00000557348 IGHV3-66A0A0C4DH42 116 aa9.63□□□□□ -0.87
SHMT2-229ENST00000557348 TAL2Q16559 108 aa9.63□□□□□ -0.87
SHMT2-229ENST00000557348 LINC00322Q6ZN03 302 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-229ENST00000557348 C9orf47Q6ZRZ4 202 aa9.63□□□□□ -0.87
SHMT2-229ENST00000557348 PGLYRP4Q96LB8 373 aa9.63□□□□□ -0.87
SHMT2-229ENST00000557348 ASCL2Q99929 193 aa9.63□□□□□ -0.87
SHMT2-229ENST00000557348 RHPN1-AS1Q9BWJ2 59 aa9.63□□□□□ -0.87
SHMT2-229ENST00000557348 CSPG4Q6UVK1 2322 aa9.63□□□□□ -0.87
SHMT2-229ENST00000557348 TRAV8-2A0A0B4J237 113 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 TMEM238LA0A1B0GVL6 79 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 F8W1H4 67 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 SMIM13P0DJ93 91 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 ID1P41134 155 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 KIR3DS1Q14943 382 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 ADAMTSL5Q6ZMM2 481 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 ERASQ7Z444 233 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 SIGMAR1Q99720 223 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 YAE1D1Q9NRH1 226 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 SPCS1Q9Y6A9 102 aa9.62□□□□□ -0.87
SHMT2-229ENST00000557348 IGHV3OR16-13A0A075B7E8 117 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 IGHV3-49A0A0A0MS15 119 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 IGHV3-74A0A0B4J1X5 117 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 TRBV7-9A0A0J9YWB2 115 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 ZNF138P52744 262 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 FOXI2Q6ZQN5 318 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 LCNL1Q6ZST4 164 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 LINC00477Q96M19 166 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 VGLL1Q99990 258 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 LINC01546A6NGU7 62 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 DNAJC9-AS1A6NH13 148 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 FABP5P3A8MUU1 101 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 SH2D1AO60880 128 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 HBDP02042 147 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 LINC00173Q6ZV60 143 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 OR10J6PQ8NGY7 276 aa9.61□□□□□ -0.87
SHMT2-229ENST00000557348 H3BUT2 72 aa9.6□□□□□ -0.87
SHMT2-229ENST00000557348 SOCS3O14543 225 aa9.6□□□□□ -0.87
SHMT2-229ENST00000557348 KRTAP1-1Q07627 177 aa9.6□□□□□ -0.87
SHMT2-229ENST00000557348 TM4SF20Q53R12 229 aa9.6□□□□□ -0.87
SHMT2-229ENST00000557348 C4orf3Q8WVX3 66 aa9.6□□□□□ -0.87
SHMT2-229ENST00000557348 C8orf49Q96NF6 230 aa9.6□□□□□ -0.87
SHMT2-229ENST00000557348 HLA-DMBP28068 263 aa9.59□□□□□ -0.87
SHMT2-229ENST00000557348 RPL11P62913 178 aaKnown RBP9.59□□□□□ -0.87
SHMT2-229ENST00000557348 CD300EQ496F6 205 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-229ENST00000557348 IGFL4Q6B9Z1 124 aa9.59□□□□□ -0.87
SHMT2-229ENST00000557348 IL17RELQ6ZVW7 336 aa9.59□□□□□ -0.87
SHMT2-229ENST00000557348 ORMDL3Q8N138 153 aa9.59□□□□□ -0.87
SHMT2-229ENST00000557348 RNF182Q8N6D2 247 aa9.59□□□□□ -0.87
SHMT2-229ENST00000557348 ZNF418Q8TF45 676 aaPredicted RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms