RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 A0A087WWL8 130 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 IGHV3-73A0A0B4J1V6 119 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 ZNF80P51504 273 aaPredicted RBP11.55□□□□□ -0.56
CUX1-215ENST00000556210 SLC50A1Q9BRV3 221 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 ASIPP42127 132 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 PIP4P2Q8N4L2 257 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 TRBV12-3P01733 135 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 SCGB1C2P0DMR2 95 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 SCGB3A1Q96QR1 104 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 C19orf71A6NCJ1 209 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 ZC2HC1BQ5TFG8 222 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 TTC9CQ8N5M4 171 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 DKK2Q9UBU2 259 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 DOPEY1Q5JWR5 2465 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 TNFRSF6BO95407 300 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 COX6B1P14854 86 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 HIST2H2BDQ6DRA6 164 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 URB1-AS1Q96HZ7 61 aa11.54□□□□□ -0.56
CUX1-215ENST00000556210 CENPVL3A0A0U1RRI6 287 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 FAM110DQ8TAY7 271 aaPredicted RBP11.53□□□□□ -0.56
CUX1-215ENST00000556210 MLST8Q9BVC4 326 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 PRSS22Q9GZN4 317 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 IGHV4-39P01824 125 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 IGKCP01834 107 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 PDE6HQ13956 83 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 CFHR4Q92496 578 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 CSTL1Q9H114 145 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 SMG1Q96Q15 3661 aaKnown RBP11.53□□□□□ -0.56
CUX1-215ENST00000556210 TRAV12-2A0A075B6T6 113 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 ID1P41134 155 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 CRIP1P50238 77 aa11.53□□□□□ -0.56
CUX1-215ENST00000556210 K7EP34 96 aa11.52□□□□□ -0.56
CUX1-215ENST00000556210 DPM2O94777 84 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 MTURNQ8N3F0 131 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 IGHV3-64A0A075B6Q5 118 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 IGHV4-30-2A0A087WSY4 118 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 A0A1B0GWB2 263 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 OOSP1A8MZH6 123 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 OR11H12B2RN74 326 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 CRYGBP07316 175 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 LGALS9BQ3B8N2 356 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 LGALS9CQ6DKI2 356 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 OR11H1Q8NG94 326 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 OR11H2Q8NH07 326 aa11.52□□□□□ -0.57
CUX1-215ENST00000556210 BEX4Q9NWD9 120 aaPredicted RBP11.52□□□□□ -0.57
CUX1-215ENST00000556210 ANKRD17O75179 2603 aaKnown RBP11.52□□□□□ -0.57
CUX1-215ENST00000556210 CIDEAO60543 219 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 TMEM170BQ5T4T1 132 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 ZNF479Q96JC4 524 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 IGHV1-69DA0A0B4J2H0 117 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 INS-IGF2F8WCM5 200 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 K7ERJ3 54 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 IGHV1-69P01742 117 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 SYNJ2BPP57105 145 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 DTX2Q86UW9 622 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 DUX3Q96PT4 197 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 CHAC1Q9BUX1 264 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 NXT2Q9NPJ8 142 aaKnown RBP11.51□□□□□ -0.57
CUX1-215ENST00000556210 RNF223E7ERA6 249 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 ATP5LO75964 103 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 PPBPP02775 128 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 Q6ZQT7 251 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 DYNLRB2Q8TF09 96 aa11.51□□□□□ -0.57
CUX1-215ENST00000556210 SRSF8Q9BRL6 282 aaKnown RBP11.51□□□□□ -0.57
CUX1-215ENST00000556210 NDUFS8O00217 210 aa11.5□□□□□ -0.57
CUX1-215ENST00000556210 UNQ9165/PRO28630Q6UXU0 137 aa11.5□□□□□ -0.57
CUX1-215ENST00000556210 A0A1W2PPM0 123 aa11.5□□□□□ -0.57
CUX1-215ENST00000556210 TNFRSF13BO14836 293 aaPredicted RBP11.5□□□□□ -0.57
CUX1-215ENST00000556210 IGF1P05019 195 aa11.5□□□□□ -0.57
CUX1-215ENST00000556210 NPBQ8NG41 125 aa11.5□□□□□ -0.57
CUX1-215ENST00000556210 SIGMAR1Q99720 223 aa11.5□□□□□ -0.57
CUX1-215ENST00000556210 CRXO43186 299 aaPredicted RBP11.5□□□□□ -0.57
CUX1-215ENST00000556210 BUB3O43684 328 aa11.5□□□□□ -0.57
CUX1-215ENST00000556210 TRBV7-1A0A0A6YYK4 115 aa11.49□□□□□ -0.57
CUX1-215ENST00000556210 TMEM238C9JI98 176 aa11.49□□□□□ -0.57
CUX1-215ENST00000556210 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.49□□□□□ -0.57
CUX1-215ENST00000556210 GNRH2O43555 120 aa11.49□□□□□ -0.57
CUX1-215ENST00000556210 Q1RN00 199 aa11.49□□□□□ -0.57
CUX1-215ENST00000556210 CD300EQ496F6 205 aaPredicted RBP11.49□□□□□ -0.57
CUX1-215ENST00000556210 ADAMTSL5Q6ZMM2 481 aa11.49□□□□□ -0.57
CUX1-215ENST00000556210 PTPRBP23467 1997 aa11.49□□□□□ -0.57
CUX1-215ENST00000556210 ITLN2Q8WWU7 325 aaPredicted RBP11.49□□□□□ -0.57
CUX1-215ENST00000556210 TRAV21A0A0B4J279 112 aa11.48□□□□□ -0.57
CUX1-215ENST00000556210 MYCNOSP40205 109 aa11.48□□□□□ -0.57
CUX1-215ENST00000556210 LY6LH3BQJ8 138 aa11.48□□□□□ -0.57
CUX1-215ENST00000556210 GAS8-AS1O95177 125 aa11.48□□□□□ -0.57
CUX1-215ENST00000556210 MSMBP08118 114 aa11.48□□□□□ -0.57
CUX1-215ENST00000556210 A0A1B0GV72 72 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 IGHV4-59P01825 116 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 SNRPD3P62318 126 aaKnown RBP11.47□□□□□ -0.57
CUX1-215ENST00000556210 MRGPRG-AS1Q2M3A8 158 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 LY6G5BQ8NDX9 201 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 MRPL16Q9NX20 251 aaKnown RBP11.47□□□□□ -0.57
CUX1-215ENST00000556210 KLK9Q9UKQ9 250 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 WI2-2373I1.2A0A1W2PRP0 233 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 IGLV2-11P01706 119 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 KNCNA6PVL3 124 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 APOMO95445 188 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 PRSS2P07478 247 aa11.47□□□□□ -0.57
CUX1-215ENST00000556210 ANXA2RQ3ZCQ2 193 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms