RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 FHITP49789 147 aa14.43□□□□□ -0.1
CCDC88C-210ENST00000555995 PRNTQ86SH4 94 aa14.43□□□□□ -0.1
CCDC88C-210ENST00000555995 NACAE9PAV3 2078 aa14.43□□□□□ -0.1
CCDC88C-210ENST00000555995 GCGP01275 180 aa14.42□□□□□ -0.1
CCDC88C-210ENST00000555995 IGLV2-11P01706 119 aa14.42□□□□□ -0.1
CCDC88C-210ENST00000555995 EIF5AL1Q6IS14 154 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-210ENST00000555995 LINC00336Q6ZUF6 198 aa14.42□□□□□ -0.1
CCDC88C-210ENST00000555995 TMUB2Q71RG4 321 aa14.42□□□□□ -0.1
CCDC88C-210ENST00000555995 SGK494Q96LW2 274 aa14.42□□□□□ -0.1
CCDC88C-210ENST00000555995 MDFICQ9P1T7 246 aa14.42□□□□□ -0.1
CCDC88C-210ENST00000555995 A0A0J9YY99 117 aa14.41□□□□□ -0.1
CCDC88C-210ENST00000555995 FAM213BQ8TBF2 198 aa14.41□□□□□ -0.1
CCDC88C-210ENST00000555995 RASL10AQ92737 203 aa14.41□□□□□ -0.1
CCDC88C-210ENST00000555995 IGHV3-16A0A0C4DH30 117 aa14.4□□□□□ -0.1
CCDC88C-210ENST00000555995 M0R2P5 195 aa14.4□□□□□ -0.1
CCDC88C-210ENST00000555995 TYMSP04818 313 aa14.4□□□□□ -0.1
CCDC88C-210ENST00000555995 LGALSLQ3ZCW2 172 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-210ENST00000555995 MBD3L1Q8WWY6 194 aa14.4□□□□□ -0.1
CCDC88C-210ENST00000555995 PRO0255Q9UI72 69 aa14.4□□□□□ -0.1
CCDC88C-210ENST00000555995 EPPK1P58107 5090 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-210ENST00000555995 UBE2G1P62253 170 aa14.39□□□□□ -0.11
CCDC88C-210ENST00000555995 SOHLH1Q5JUK2 328 aa14.39□□□□□ -0.11
CCDC88C-210ENST00000555995 Q6ZNX1 250 aa14.39□□□□□ -0.11
CCDC88C-210ENST00000555995 Q86TA4 180 aa14.39□□□□□ -0.11
CCDC88C-210ENST00000555995 SFT2D1Q8WV19 159 aa14.39□□□□□ -0.11
CCDC88C-210ENST00000555995 FMC1Q96HJ9 113 aa14.39□□□□□ -0.11
CCDC88C-210ENST00000555995 C8orf49Q96NF6 230 aa14.39□□□□□ -0.11
CCDC88C-210ENST00000555995 RAB5CP51148 216 aa14.38□□□□□ -0.11
CCDC88C-210ENST00000555995 CST9LP1Q5W188 147 aa14.38□□□□□ -0.11
CCDC88C-210ENST00000555995 ZFP30Q9Y2G7 519 aa14.38□□□□□ -0.11
CCDC88C-210ENST00000555995 TRAV4A0A0B4J268 109 aa14.37□□□□□ -0.11
CCDC88C-210ENST00000555995 TRGV4A0A0C4DH28 118 aa14.37□□□□□ -0.11
CCDC88C-210ENST00000555995 PAX4O43316 350 aa14.37□□□□□ -0.11
CCDC88C-210ENST00000555995 C1QBP02746 253 aa14.37□□□□□ -0.11
CCDC88C-210ENST00000555995 H2AFB1P0C5Y9 115 aa14.37□□□□□ -0.11
CCDC88C-210ENST00000555995 ICOSQ9Y6W8 199 aa14.37□□□□□ -0.11
CCDC88C-210ENST00000555995 IGLV2-18A0A075B6J9 118 aa14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 TRBV6-1A0A0K0K1D8 114 aa14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 TEX46H3BTG2 121 aa14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 GNRH2O43555 120 aa14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 ZNF80P51504 273 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 Q6ZR54 194 aa14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 ZNRF2Q8NHG8 242 aa14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 LINC00588Q9Y4M8 146 aa14.36□□□□□ -0.11
CCDC88C-210ENST00000555995 TRAV34A0A0B4J273 112 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 FABP5P3A8MUU1 101 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 M0R2N4 97 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 CIDEAO60543 219 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 IGHV3-53P01767 116 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 S100A9P06702 114 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 AKAP14Q86UN6 197 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 VSIG2Q96IQ7 327 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 HHLA3Q9XRX5 114 aa14.35□□□□□ -0.11
CCDC88C-210ENST00000555995 PAGE4O60829 102 aa14.34□□□□□ -0.11
CCDC88C-210ENST00000555995 AKR1C3P42330 323 aa14.34□□□□□ -0.11
CCDC88C-210ENST00000555995 OR4C5Q8NGB2 326 aa14.34□□□□□ -0.11
CCDC88C-210ENST00000555995 PCNPQ8WW12 178 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-210ENST00000555995 LINC00479Q96M42 142 aa14.34□□□□□ -0.11
CCDC88C-210ENST00000555995 UPK3BQ9BT76 320 aa14.34□□□□□ -0.11
CCDC88C-210ENST00000555995 DNAH10Q8IVF4 4471 aa14.33□□□□□ -0.11
CCDC88C-210ENST00000555995 ORM1P02763 201 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 CRYBA4P53673 196 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 FHL2Q14192 279 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 MRPL23Q16540 153 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 TTC32Q5I0X7 151 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 COX8CQ7Z4L0 72 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 SLC51BQ86UW2 128 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 PTH2Q96A98 100 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 MRPS16Q9Y3D3 137 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 BIRC6Q9NR09 4857 aa14.33□□□□□ -0.12
CCDC88C-210ENST00000555995 A0A096LPF7 62 aa14.32□□□□□ -0.12
CCDC88C-210ENST00000555995 MANBALQ9NQG1 85 aa14.32□□□□□ -0.12
CCDC88C-210ENST00000555995 C11orf21Q9P2W6 132 aa14.32□□□□□ -0.12
CCDC88C-210ENST00000555995 FRAS1Q86XX4 4008 aa14.32□□□□□ -0.12
CCDC88C-210ENST00000555995 NBDYA0A0U1RRE5 68 aa14.31□□□□□ -0.12
CCDC88C-210ENST00000555995 S100A4P26447 101 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-210ENST00000555995 ZNF876PQ49A33 203 aa14.31□□□□□ -0.12
CCDC88C-210ENST00000555995 ZNF479Q96JC4 524 aa14.31□□□□□ -0.12
CCDC88C-210ENST00000555995 C9orf85Q96MD7 179 aa14.31□□□□□ -0.12
CCDC88C-210ENST00000555995 TXNDC17Q9BRA2 123 aa14.31□□□□□ -0.12
CCDC88C-210ENST00000555995 TRAV1-1A0A0B4J248 108 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 A0A1B0GV50 99 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 C9JCJ5 164 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 LTAP01374 205 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 SFTA3P0C7M3 94 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 ASIPP42127 132 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 FAM162BQ5T6X4 162 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 C1orf134Q5TEV5 83 aa14.3□□□□□ -0.12
CCDC88C-210ENST00000555995 B4DEV8 164 aa14.29□□□□□ -0.12
CCDC88C-210ENST00000555995 SULT1A2P50226 295 aa14.29□□□□□ -0.12
CCDC88C-210ENST00000555995 ESRGQ1W209 222 aa14.29□□□□□ -0.12
CCDC88C-210ENST00000555995 PIK3CD-AS1Q5SR53 167 aa14.29□□□□□ -0.12
CCDC88C-210ENST00000555995 Q9H8V8 135 aa14.29□□□□□ -0.12
CCDC88C-210ENST00000555995 SRIP30626 198 aa14.28□□□□□ -0.12
CCDC88C-210ENST00000555995 NEGR1Q7Z3B1 354 aa14.28□□□□□ -0.12
CCDC88C-210ENST00000555995 SH2D6Q7Z4S9 175 aa14.28□□□□□ -0.12
CCDC88C-210ENST00000555995 ZC2HC1AQ96GY0 325 aa14.28□□□□□ -0.12
CCDC88C-210ENST00000555995 A0A1W2PPQ1 181 aa14.27□□□□□ -0.13
CCDC88C-210ENST00000555995 hCG_2014768A0A024R1R8 64 aa14.26□□□□□ -0.13
CCDC88C-210ENST00000555995 IGKV3D-20A0A0C4DH25 116 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms