RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 M0R381 172 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 TRBV12-3P01733 135 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 ORMDL2Q53FV1 153 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 CST9LQ9H4G1 147 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 DPH3P1Q9H4G8 78 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 TRAV26-2A0A0B4J265 109 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 TMEM8BA6NDV4 472 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 SAMD13Q5VXD3 122 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 CCL19Q99731 98 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 ZNF580Q9UK33 172 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 PLNP26678 52 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 TCTAP57738 103 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 UFSP1Q6NVU6 142 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 CLEC2AQ6UVW9 174 aa10.23□□□□□ -0.77
SHMT2-222ENST00000555774 IGKV2D-26A0A0A0MRZ7 120 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 PPP1R17O96001 155 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 IGHV4-38-2P0DP08 117 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 S100A4P26447 101 aaKnown RBP10.22□□□□□ -0.77
SHMT2-222ENST00000555774 ZC2HC1BQ5TFG8 222 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 Q6ZQT7 251 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 IGF2RP11717 2491 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 TACC2O95359 2948 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.22□□□□□ -0.77
SHMT2-222ENST00000555774 H3BUX3 64 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 K7EP34 96 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 IGLV1-40P01703 118 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 CHAC1Q9BUX1 264 aa10.22□□□□□ -0.77
SHMT2-222ENST00000555774 MRPL35Q9NZE8 188 aaKnown RBP10.22□□□□□ -0.77
SHMT2-222ENST00000555774 GAGE12BA1L429 117 aa10.21□□□□□ -0.77
SHMT2-222ENST00000555774 PF4V1P10720 104 aa10.21□□□□□ -0.77
SHMT2-222ENST00000555774 SUMO2P61956 95 aaKnown RBP10.21□□□□□ -0.77
SHMT2-222ENST00000555774 LY6EQ16553 131 aa10.21□□□□□ -0.77
SHMT2-222ENST00000555774 OCIAD2Q56VL3 154 aa10.21□□□□□ -0.77
SHMT2-222ENST00000555774 PHLDA3Q9Y5J5 127 aa10.21□□□□□ -0.77
SHMT2-222ENST00000555774 K7EMT4 169 aa10.21□□□□□ -0.78
SHMT2-222ENST00000555774 ANXA2RQ3ZCQ2 193 aa10.21□□□□□ -0.78
SHMT2-222ENST00000555774 GTSCR1Q86UQ5 136 aa10.21□□□□□ -0.78
SHMT2-222ENST00000555774 JMJD8Q96S16 334 aa10.21□□□□□ -0.78
SHMT2-222ENST00000555774 DAZ1Q9NQZ3 744 aaKnown RBP10.21□□□□□ -0.78
SHMT2-222ENST00000555774 TMEM160Q9NX00 188 aa10.21□□□□□ -0.78
SHMT2-222ENST00000555774 WNK2Q9Y3S1 2297 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 H3BUT2 72 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 H7C1H1 209 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 NXPH4O95158 308 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 SMIM13P0DJ93 91 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 TAL2Q16559 108 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 POM121L12Q8N7R1 296 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 RASL10AQ92737 203 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 TOMM6Q96B49 74 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 RHPN1-AS1Q9BWJ2 59 aa10.2□□□□□ -0.78
SHMT2-222ENST00000555774 TRBV25-1A0A075B6N4 114 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 IGHV3-11P01762 117 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 MSMBP08118 114 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 CFHR3Q02985 330 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 OR5A1Q8NGJ0 315 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 A0A1W2PPM0 123 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 F8VRH5 84 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 TM2D2Q9BX73 214 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 KLK15Q9H2R5 256 aa10.19□□□□□ -0.78
SHMT2-222ENST00000555774 J3KRW8 73 aa10.18□□□□□ -0.78
SHMT2-222ENST00000555774 RNASE4P34096 147 aaKnown RBP10.18□□□□□ -0.78
SHMT2-222ENST00000555774 ID1P41134 155 aa10.18□□□□□ -0.78
SHMT2-222ENST00000555774 RPL11P62913 178 aaKnown RBP10.18□□□□□ -0.78
SHMT2-222ENST00000555774 SPOCK3Q9BQ16 436 aa10.18□□□□□ -0.78
SHMT2-222ENST00000555774 K7ERU9 68 aa10.18□□□□□ -0.78
SHMT2-222ENST00000555774 GCSHP23434 173 aa10.18□□□□□ -0.78
SHMT2-222ENST00000555774 ATP5J2P56134 94 aa10.18□□□□□ -0.78
SHMT2-222ENST00000555774 RPL32P62910 135 aaKnown RBP10.18□□□□□ -0.78
SHMT2-222ENST00000555774 SCGB3A1Q96QR1 104 aa10.18□□□□□ -0.78
SHMT2-222ENST00000555774 LINC01549A6NIU2 74 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 RNASE3P12724 160 aaKnown RBP10.17□□□□□ -0.78
SHMT2-222ENST00000555774 PCP4P48539 62 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 C14orf178Q8N769 122 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-222ENST00000555774 RELNP78509 3460 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 ATRXP46100 2492 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 IGHV4-30-2A0A087WSY4 118 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 KLLNB2CW77 178 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 LINC01619G3V211 115 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 GATA3P23771 443 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 BLCAPP62952 87 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 CEND1Q8N111 149 aa10.17□□□□□ -0.78
SHMT2-222ENST00000555774 FABP2P12104 132 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 FXYD2P54710 66 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 TM4SF20Q53R12 229 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 NEXN-AS1Q8NBZ9 246 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 CHTOPQ9Y3Y2 248 aaKnown RBP10.16□□□□□ -0.78
SHMT2-222ENST00000555774 HIVEP3Q5T1R4 2406 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 TMEM89A2RUT3 159 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 B4DSR2 109 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 RNF223E7ERA6 249 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 MGPP08493 103 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 DSCR9P59020 149 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 RAB37Q96AX2 223 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 TTTY13Q9BZ97 58 aa10.16□□□□□ -0.78
SHMT2-222ENST00000555774 F6UB75 175 aa10.15□□□□□ -0.78
SHMT2-222ENST00000555774 RPL39LQ96EH5 51 aaKnown RBP10.15□□□□□ -0.78
SHMT2-222ENST00000555774 ODF3Q96PU9 254 aa10.15□□□□□ -0.78
SHMT2-222ENST00000555774 SPCS1Q9Y6A9 102 aa10.15□□□□□ -0.78
SHMT2-222ENST00000555774 NBASA2RRP1 2371 aa10.15□□□□□ -0.78
SHMT2-222ENST00000555774 IGHV4OR15-8A0A075B7B6 117 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 824 ms