RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ZNF415Q09FC8 603 aa8.06□□□□□ -1.12
CCDC88C-208ENST00000554165 VSIG2Q96IQ7 327 aa8.06□□□□□ -1.12
CCDC88C-208ENST00000554165 SERTM2A0A1B0GWG4 89 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 PAGE4O60829 102 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 GCGP01275 180 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 TYMSP04818 313 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 SFTA3P0C7M3 94 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 TDRG1Q3Y452 100 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 RNF212Q495C1 297 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 TCTE3Q8IZS6 198 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 SFT2D1Q8WV19 159 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 MBD3L1Q8WWY6 194 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 NDFIP1Q9BT67 221 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 LINC00588Q9Y4M8 146 aa8.05□□□□□ -1.12
CCDC88C-208ENST00000554165 TRGV11A0A075B6L2 103 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 K7EQM0 130 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 CCL20P78556 96 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 LGALS9BQ3B8N2 356 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 CST9LP1Q5W188 147 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 Q86TA4 180 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 ZNF479Q96JC4 524 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 C18orf15Q96N68 181 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 ARL2-SNX15V9GYD0 113 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 DNAH2Q9P225 4427 aa8.04□□□□□ -1.12
CCDC88C-208ENST00000554165 A0A1B0GVG6 124 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 FHL2Q14192 279 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 ESRGQ1W209 222 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 SMUG1Q53HV7 270 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 Q6ZR54 194 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 ZNRF2Q8NHG8 242 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 STOML3Q8TAV4 291 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 SDF2L1Q9HCN8 221 aa8.03□□□□□ -1.12
CCDC88C-208ENST00000554165 DNAH17Q9UFH2 4485 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 A0A096LPF7 62 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 IGKV3D-20A0A0C4DH25 116 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 UMAD1C9J7I0 102 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 RTL8CO15255 209 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 C1QBP02746 253 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 PFN1P07737 140 aaKnown RBP8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 TPT1P13693 172 aaKnown RBP8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 CRIP1P50238 77 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 RASL10AQ92737 203 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 SPXQ9BT56 116 aa8.02□□□□□ -1.13
CCDC88C-208ENST00000554165 SCO2A0A1W2PP80 73 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 C9JCJ5 164 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 M0R2P5 195 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 PAX4O43316 350 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 H2AFB1P0C5Y9 115 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 SAPCD1Q5SSQ6 148 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 DPPA3Q6W0C5 159 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 HIST1H2BAQ96A08 127 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 ZC2HC1AQ96GY0 325 aa8.01□□□□□ -1.13
CCDC88C-208ENST00000554165 FAT2Q9NYQ8 4349 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 TRGV4A0A0C4DH28 118 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 PGPEP1LA6NFU8 196 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 H3BNG1 76 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 RNASE3P12724 160 aaKnown RBP8□□□□□ -1.13
CCDC88C-208ENST00000554165 PPT1P50897 306 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 CRYBA4P53673 196 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 CCL18P55774 89 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 EIF5AP63241 154 aaKnown RBP8□□□□□ -1.13
CCDC88C-208ENST00000554165 ZFP69Q49AA0 526 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 AKAP14Q86UN6 197 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 ZNF575Q86XF7 245 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 NHLRC2Q8NBF2 726 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 KCNS1Q96KK3 526 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 NKX6-2Q9C056 277 aaPredicted RBP8□□□□□ -1.13
CCDC88C-208ENST00000554165 HHLA3Q9XRX5 114 aa8□□□□□ -1.13
CCDC88C-208ENST00000554165 LOC100131303A0A0U1RQF7 123 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 FBLL1A6NHQ2 334 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 M0R036 132 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 SH2D1AO60880 128 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 C9orf62Q8N4C0 152 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 C9orf85Q96MD7 179 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 KRTAP1-5Q9BYS1 174 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 GNG13Q9P2W3 67 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 PRO0255Q9UI72 69 aa7.99□□□□□ -1.13
CCDC88C-208ENST00000554165 IGHV3-73A0A0B4J1V6 119 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 TRAV4A0A0B4J268 109 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 GRIFINA4D1Z8 144 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 FABP5P3A8MUU1 101 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 LTAP01374 205 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 ORM1P02763 201 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 AKR1C3P42330 323 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 NKX2-5P52952 324 aaPredicted RBP7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 FAM3BP58499 235 aaPredicted RBP7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 UBE2G1P62253 170 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 ZNF876PQ49A33 203 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 OR4C5Q8NGB2 326 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 FMC1Q96HJ9 113 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 ZFP30Q9Y2G7 519 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 ICOSQ9Y6W8 199 aa7.98□□□□□ -1.13
CCDC88C-208ENST00000554165 HECTD4Q9Y4D8 3996 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 TMSB15BA0A087X1C1 80 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 TRBV6-1A0A0K0K1D8 114 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 NBDYA0A0U1RRE5 68 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 B4DEV8 164 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 SULT1A2P50226 295 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 ZNF506Q5JVG8 444 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 CFAP126Q5VTH2 177 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms