RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 GAGE12FP0CL80 117 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 GAGE12GP0CL81 117 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 GAGE12IP0CL82 117 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 TAGLN2P37802 199 aaKnown RBP10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 TMEM183BQ1AE95 376 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 MUC21Q5SSG8 566 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 TMEM183AQ8IXX5 376 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 TVP23CQ96ET8 276 aa10.15□□□□□ -0.78
CCDC88C-207ENST00000554051 PAGE4O60829 102 aa10.14□□□□□ -0.79
CCDC88C-207ENST00000554051 FAM3BP58499 235 aaPredicted RBP10.14□□□□□ -0.79
CCDC88C-207ENST00000554051 Q6ZTI0 123 aa10.14□□□□□ -0.79
CCDC88C-207ENST00000554051 PLA2G2EQ9NZK7 142 aa10.14□□□□□ -0.79
CCDC88C-207ENST00000554051 SLAQ13239 276 aa10.13□□□□□ -0.79
CCDC88C-207ENST00000554051 RNF212Q495C1 297 aa10.13□□□□□ -0.79
CCDC88C-207ENST00000554051 COX8CQ7Z4L0 72 aa10.13□□□□□ -0.79
CCDC88C-207ENST00000554051 UBE2DNLQ8IWF7 75 aa10.13□□□□□ -0.79
CCDC88C-207ENST00000554051 SGK494Q96LW2 274 aa10.13□□□□□ -0.79
CCDC88C-207ENST00000554051 IGHV3-16A0A0C4DH30 117 aa10.12□□□□□ -0.79
CCDC88C-207ENST00000554051 TYMSP04818 313 aa10.12□□□□□ -0.79
CCDC88C-207ENST00000554051 POM121L12Q8N7R1 296 aa10.12□□□□□ -0.79
CCDC88C-207ENST00000554051 C8orf49Q96NF6 230 aa10.12□□□□□ -0.79
CCDC88C-207ENST00000554051 RYR2Q92736 4967 aa10.12□□□□□ -0.79
CCDC88C-207ENST00000554051 TRAV34A0A0B4J273 112 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 A0A1B0GV50 99 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 FABP5P3A8MUU1 101 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 M0R2P5 195 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 LTAP01374 205 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 RASL10AQ92737 203 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 MRPL16Q9NX20 251 aaKnown RBP10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 MDFICQ9P1T7 246 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 GNG13Q9P2W3 67 aa10.11□□□□□ -0.79
CCDC88C-207ENST00000554051 LYSTQ99698 3801 aa10.1□□□□□ -0.79
CCDC88C-207ENST00000554051 CIDEAO60543 219 aa10.1□□□□□ -0.79
CCDC88C-207ENST00000554051 OR5I1Q13606 314 aa10.1□□□□□ -0.79
CCDC88C-207ENST00000554051 FAM162BQ5T6X4 162 aa10.1□□□□□ -0.79
CCDC88C-207ENST00000554051 Q6ZQT7 251 aa10.1□□□□□ -0.79
CCDC88C-207ENST00000554051 C11orf52Q96A22 123 aa10.1□□□□□ -0.79
CCDC88C-207ENST00000554051 LINC00479Q96M42 142 aa10.1□□□□□ -0.79
CCDC88C-207ENST00000554051 PDE6DO43924 150 aa10.09□□□□□ -0.79
CCDC88C-207ENST00000554051 ASIPP42127 132 aa10.09□□□□□ -0.79
CCDC88C-207ENST00000554051 ZNF80P51504 273 aaPredicted RBP10.09□□□□□ -0.79
CCDC88C-207ENST00000554051 BLOC1S1P78537 153 aa10.09□□□□□ -0.79
CCDC88C-207ENST00000554051 PIK3CD-AS1Q5SR53 167 aa10.09□□□□□ -0.79
CCDC88C-207ENST00000554051 PTH2Q96A98 100 aa10.09□□□□□ -0.79
CCDC88C-207ENST00000554051 TRAV26-1A0A087WT03 109 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 TRAV4A0A0B4J268 109 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 SCO2A0A1W2PP80 73 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 NUDT3O95989 172 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 BCL2P10415 239 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 CCL18P55774 89 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 MEF2BQ02080 365 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 SMIM12Q96EX1 92 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 PRO0255Q9UI72 69 aa10.08□□□□□ -0.8
CCDC88C-207ENST00000554051 RYR3Q15413 4870 aa10.07□□□□□ -0.8
CCDC88C-207ENST00000554051 HOXA5P20719 270 aa10.07□□□□□ -0.8
CCDC88C-207ENST00000554051 S100A4P26447 101 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-207ENST00000554051 ZC2HC1AQ96GY0 325 aa10.07□□□□□ -0.8
CCDC88C-207ENST00000554051 C9orf85Q96MD7 179 aa10.07□□□□□ -0.8
CCDC88C-207ENST00000554051 TRGV4A0A0C4DH28 118 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 A0A1B0GVG6 124 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 B4DEV8 164 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 GNRH2O43555 120 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 ZNF674Q2M3X9 581 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 LINC01559Q495D7 138 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 DNLZQ5SXM8 178 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 VAX2Q9UIW0 290 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 BOLA1Q9Y3E2 137 aa10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 PLECQ15149 4684 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-207ENST00000554051 PAX4O43316 350 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 SH2D1AO60880 128 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 ORM1P02763 201 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 CXCL1P09341 107 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 ALKAL2Q6UX46 152 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 BAGE2Q86Y30 109 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 OR4C5Q8NGB2 326 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 PCNPQ8WW12 178 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 BIN3Q9NQY0 253 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 IL36BQ9NZH7 164 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 C11orf21Q9P2W6 132 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 ICOSQ9Y6W8 199 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 DNAH1Q9P2D7 4330 aa10.05□□□□□ -0.8
CCDC88C-207ENST00000554051 MUC4Q99102 2169 aa10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 SACSQ9NZJ4 4579 aa10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 IGKV3D-20A0A0C4DH25 116 aa10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 A0A0J9YY99 117 aa10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 RPL35P42766 123 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 CCL20P78556 96 aa10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 ZNF876PQ49A33 203 aa10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 LCE2DQ5TA82 110 aaPredicted RBP10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 SYT8Q8NBV8 401 aa10.04□□□□□ -0.8
CCDC88C-207ENST00000554051 A8MWV9 139 aa10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 C9JCJ5 164 aa10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 IGHV3-53P01767 116 aa10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 MED14OSP0DP75 135 aa10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 RNASE3P12724 160 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 MRPL23Q16540 153 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 SH2D6Q7Z4S9 175 aa10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 MLST8Q9BVC4 326 aa10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 HHLA3Q9XRX5 114 aa10.03□□□□□ -0.8
CCDC88C-207ENST00000554051 KRBOX1C9JBD0 128 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms