RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 DIRC3C9JPN6 131 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 HMGB3O15347 200 aaKnown RBP8.17□□□□□ -1.1
SRP54-203ENST00000553544 GAGE7O76087 117 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 GAGE12FP0CL80 117 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 GAGE12GP0CL81 117 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 GAGE12IP0CL82 117 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 HOXA5P20719 270 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 LGALSLQ3ZCW2 172 aaPredicted RBP8.17□□□□□ -1.1
SRP54-203ENST00000553544 Q6ZTI0 123 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 ZNF680Q8NEM1 530 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 SUN5Q8TC36 379 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 MAP1LC3BQ9GZQ8 125 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 GSN-AS1Q9NRJ2 163 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 ARL2-SNX15V9GYD0 113 aa8.17□□□□□ -1.1
SRP54-203ENST00000553544 hCG_2014768A0A024R1R8 64 aa8.16□□□□□ -1.1
SRP54-203ENST00000553544 A0A1W2PPQ1 181 aa8.16□□□□□ -1.1
SRP54-203ENST00000553544 TCL1AP56279 114 aa8.16□□□□□ -1.1
SRP54-203ENST00000553544 ZFP69Q49AA0 526 aa8.16□□□□□ -1.1
SRP54-203ENST00000553544 IBA57Q5T440 356 aaKnown RBP8.16□□□□□ -1.1
SRP54-203ENST00000553544 SLC51BQ86UW2 128 aa8.16□□□□□ -1.1
SRP54-203ENST00000553544 Q8TAT8 98 aa8.16□□□□□ -1.1
SRP54-203ENST00000553544 FRZBQ92765 325 aa8.16□□□□□ -1.1
SRP54-203ENST00000553544 IGHV1OR15-1A0A075B7D0 117 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 TRAV26-1A0A087WT03 109 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 F6UZH7 168 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 H3BNG1 76 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 SPINK4O60575 86 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 OR5I1Q13606 314 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 KRTAP1-5Q9BYS1 174 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 TP53TG3Q9ULZ0 132 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 RPH3ALQ9UNE2 315 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 KLF12Q9Y4X4 402 aa8.15□□□□□ -1.1
SRP54-203ENST00000553544 EREGO14944 169 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 XGP55808 180 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 Q5VSD8 79 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 Q6AWC8 147 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 GOLT1AQ6ZVE7 132 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 CYB561D1Q8N8Q1 229 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 FAM213BQ8TBF2 198 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 HIST1H2BAQ96A08 127 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 TMPRSS5Q9H3S3 457 aa8.14□□□□□ -1.11
SRP54-203ENST00000553544 RGS13O14921 159 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 IFNA7P01567 189 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 TCRAP04437 139 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 H2AFB1P0C5Y9 115 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 FHITP49789 147 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 SUMO1P63165 101 aaKnown RBP8.13□□□□□ -1.11
SRP54-203ENST00000553544 ESRGQ1W209 222 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 TMEM75Q8N9X5 138 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 SFT2D1Q8WV19 159 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 UPK3BQ9BT76 320 aa8.13□□□□□ -1.11
SRP54-203ENST00000553544 FLG2Q5D862 2391 aaPredicted RBP8.13□□□□□ -1.11
SRP54-203ENST00000553544 TRGV2A0A075B6R0 118 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 TRGV1A0A0A0MS02 117 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 A0A0J9YY99 117 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 ZNF726P1Q15940 193 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 SAPCD1Q5SSQ6 148 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 MBD3L1Q8WWY6 194 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 TVP23CQ96ET8 276 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 VSIG2Q96IQ7 327 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 EPDR1Q9UM22 224 aa8.12□□□□□ -1.11
SRP54-203ENST00000553544 TRAV21A0A0B4J279 112 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 GGTLC3B5MD39 225 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 TAGLN2P37802 199 aaKnown RBP8.11□□□□□ -1.11
SRP54-203ENST00000553544 FGF8P55075 233 aaPredicted RBP8.11□□□□□ -1.11
SRP54-203ENST00000553544 FLI1Q01543 452 aaPredicted RBP8.11□□□□□ -1.11
SRP54-203ENST00000553544 TDRG1Q3Y452 100 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 MUC21Q5SSG8 566 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 CDPF1Q6NVV7 123 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 FAM159AQ6UWV7 190 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 TXNDC17Q9BRA2 123 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 TREM1Q9NP99 234 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 MANBALQ9NQG1 85 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 MDFICQ9P1T7 246 aa8.11□□□□□ -1.11
SRP54-203ENST00000553544 MYCBP2O75592 4640 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 TRGV11A0A075B6L2 103 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 A0A096LPF7 62 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 TRAV8-1A0A0A6YYK1 113 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 FAM74A7A6NL05 159 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 FAM229AH3BQW9 127 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 IFNA1P01562 189 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 SULT1A2P50226 295 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 UBE2G2P60604 165 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 UBE2G1P62253 170 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 GNG5P63218 68 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 ZNF415Q09FC8 603 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 CST9LP1Q5W188 147 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 FMC1Q96HJ9 113 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 KCNS1Q96KK3 526 aa8.1□□□□□ -1.11
SRP54-203ENST00000553544 MRPL16Q9NX20 251 aaKnown RBP8.1□□□□□ -1.11
SRP54-203ENST00000553544 MRPS16Q9Y3D3 137 aaKnown RBP8.1□□□□□ -1.11
SRP54-203ENST00000553544 VPS13BQ7Z7G8 4022 aa8.09□□□□□ -1.11
SRP54-203ENST00000553544 J3QL48 77 aa8.09□□□□□ -1.11
SRP54-203ENST00000553544 PEX7O00628 323 aa8.09□□□□□ -1.11
SRP54-203ENST00000553544 S100A9P06702 114 aaKnown RBP8.09□□□□□ -1.11
SRP54-203ENST00000553544 AKR1C3P42330 323 aa8.09□□□□□ -1.11
SRP54-203ENST00000553544 LINC00315P59091 139 aa8.09□□□□□ -1.11
SRP54-203ENST00000553544 SMUG1Q53HV7 270 aa8.09□□□□□ -1.11
SRP54-203ENST00000553544 C9orf62Q8N4C0 152 aa8.09□□□□□ -1.11
SRP54-203ENST00000553544 RASL10AQ92737 203 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms