RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 SH2D6Q7Z4S9 175 aa8.72□□□□□ -1.01
LINC00643-202ENST00000553426 WFDC1Q9HC57 220 aa8.72□□□□□ -1.01
LINC00643-202ENST00000553426 SDF2L1Q9HCN8 221 aa8.72□□□□□ -1.01
LINC00643-202ENST00000553426 PGPEP1Q9NXJ5 209 aa8.72□□□□□ -1.01
LINC00643-202ENST00000553426 SERTM2A0A1B0GWG4 89 aa8.71□□□□□ -1.02
LINC00643-202ENST00000553426 CDC34P49427 236 aaPredicted RBP8.71□□□□□ -1.02
LINC00643-202ENST00000553426 TRAV8-1A0A0A6YYK1 113 aa8.7□□□□□ -1.02
LINC00643-202ENST00000553426 IGHV3-16A0A0C4DH30 117 aa8.7□□□□□ -1.02
LINC00643-202ENST00000553426 HMGB3O15347 200 aaKnown RBP8.7□□□□□ -1.02
LINC00643-202ENST00000553426 GNRH2O43555 120 aa8.7□□□□□ -1.02
LINC00643-202ENST00000553426 MBP02144 154 aa8.7□□□□□ -1.02
LINC00643-202ENST00000553426 Q6ZRN7 208 aaPredicted RBP8.7□□□□□ -1.02
LINC00643-202ENST00000553426 Q8N1X5 172 aa8.7□□□□□ -1.02
LINC00643-202ENST00000553426 C10orf126Q8N4M7 172 aa8.7□□□□□ -1.02
LINC00643-202ENST00000553426 ASB13Q8WXK3 278 aa8.7□□□□□ -1.02
LINC00643-202ENST00000553426 F6UZH7 168 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 TYMSP04818 313 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 ARL14EPLP0DKL9 152 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 ZFP69Q49AA0 526 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 CDPF1Q6NVV7 123 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 C5orf17Q8NAS9 161 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 NHLRC2Q8NBF2 726 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 HSD17B11Q8NBQ5 300 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 OR2G3Q8NGZ4 309 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 SCRT2Q9NQ03 307 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 BOLA1Q9Y3E2 137 aa8.69□□□□□ -1.02
LINC00643-202ENST00000553426 FBLL1A6NHQ2 334 aaKnown RBP8.68□□□□□ -1.02
LINC00643-202ENST00000553426 TAAR5O14804 337 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 STAG3L2P0CL84 134 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 STAG3L3P0CL85 134 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 GNG5P63218 68 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 SERF2P84101 59 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 PSMG3Q9BT73 122 aaPredicted RBP8.68□□□□□ -1.02
LINC00643-202ENST00000553426 MED28Q9H204 178 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 MSRB1Q9NZV6 116 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 ALG5Q9Y673 324 aa8.68□□□□□ -1.02
LINC00643-202ENST00000553426 CIDEAO60543 219 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 TCRAP04437 139 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 CRYGDP07320 174 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 PFN1P07737 140 aaKnown RBP8.67□□□□□ -1.02
LINC00643-202ENST00000553426 DNAH10OSP0CZ25 163 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 GCHFRP30047 84 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 PPT1P50897 306 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 ZNF876PQ49A33 203 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 WFDC10BQ8IUB3 73 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 RAB24Q969Q5 203 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 TVP23CQ96ET8 276 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 SGK494Q96LW2 274 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 BATF3Q9NR55 127 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 TMEM167BQ9NRX6 74 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 TNFRSF18Q9Y5U5 241 aa8.67□□□□□ -1.02
LINC00643-202ENST00000553426 CXorf1O96002 111 aa8.66□□□□□ -1.02
LINC00643-202ENST00000553426 GCGP01275 180 aa8.66□□□□□ -1.02
LINC00643-202ENST00000553426 GATA1P15976 413 aaPredicted RBP8.66□□□□□ -1.02
LINC00643-202ENST00000553426 ATP6V0CP27449 155 aa8.66□□□□□ -1.02
LINC00643-202ENST00000553426 SMUG1Q53HV7 270 aa8.66□□□□□ -1.02
LINC00643-202ENST00000553426 INO80EQ8NBZ0 244 aaPredicted RBP8.66□□□□□ -1.02
LINC00643-202ENST00000553426 AQP10Q96PS8 301 aa8.66□□□□□ -1.02
LINC00643-202ENST00000553426 PRADC1Q9BSG0 188 aa8.66□□□□□ -1.02
LINC00643-202ENST00000553426 ACTR3CQ9C0K3 210 aaPredicted RBP8.66□□□□□ -1.02
LINC00643-202ENST00000553426 A0A087WTM6 91 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 TRAV8-6A0A0B4J262 113 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 PTTG1O95997 202 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 TIRAPP58753 221 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 SUMO1P63165 101 aaKnown RBP8.65□□□□□ -1.02
LINC00643-202ENST00000553426 FLI1Q01543 452 aaPredicted RBP8.65□□□□□ -1.02
LINC00643-202ENST00000553426 RHOHQ15669 191 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 SAPCD1Q5SSQ6 148 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 CYB561D1Q8N8Q1 229 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 TNFSF18Q9UNG2 199 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 PSG8Q9UQ74 426 aa8.65□□□□□ -1.02
LINC00643-202ENST00000553426 IGHV3-38A0A0C4DH36 116 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 LOC100131303A0A0U1RQF7 123 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 TRBV6-4A0A1B0GX49 114 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 PSCAO43653 123 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 OR10J3Q5JRS4 329 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 PRNTQ86SH4 94 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 SUN5Q8TC36 379 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 SH3BGRL3Q9H299 93 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 EPDR1Q9UM22 224 aa8.64□□□□□ -1.03
LINC00643-202ENST00000553426 BORCS7-ASMTA0A0B4J1R7 106 aa8.63□□□□□ -1.03
LINC00643-202ENST00000553426 CFAP126Q5VTH2 177 aa8.63□□□□□ -1.03
LINC00643-202ENST00000553426 SLC25A29Q8N8R3 303 aa8.63□□□□□ -1.03
LINC00643-202ENST00000553426 TMEM75Q8N9X5 138 aa8.63□□□□□ -1.03
LINC00643-202ENST00000553426 A0A1W2PRE2 83 aa8.62□□□□□ -1.03
LINC00643-202ENST00000553426 EPM2AB3EWF7 344 aa8.62□□□□□ -1.03
LINC00643-202ENST00000553426 RS1O15537 224 aa8.62□□□□□ -1.03
LINC00643-202ENST00000553426 IFNA7P01567 189 aa8.62□□□□□ -1.03
LINC00643-202ENST00000553426 GIPP09681 153 aaPredicted RBP8.62□□□□□ -1.03
LINC00643-202ENST00000553426 MGST1P10620 155 aaKnown RBP8.62□□□□□ -1.03
LINC00643-202ENST00000553426 S100A4P26447 101 aaKnown RBP8.62□□□□□ -1.03
LINC00643-202ENST00000553426 ZNF80P51504 273 aaPredicted RBP8.62□□□□□ -1.03
LINC00643-202ENST00000553426 PTH2Q96A98 100 aa8.62□□□□□ -1.03
LINC00643-202ENST00000553426 NKX6-2Q9C056 277 aaPredicted RBP8.62□□□□□ -1.03
LINC00643-202ENST00000553426 FAT1Q14517 4588 aa8.61□□□□□ -1.03
LINC00643-202ENST00000553426 IGHV3-73A0A0B4J1V6 119 aa8.61□□□□□ -1.03
LINC00643-202ENST00000553426 GGTLC3B5MD39 225 aa8.61□□□□□ -1.03
LINC00643-202ENST00000553426 IGLV2-11P01706 119 aa8.61□□□□□ -1.03
LINC00643-202ENST00000553426 FUSP35637 526 aaKnown RBP eCLIP8.61□□□□□ -1.03
LINC00643-202ENST00000553426 LINC01556Q5JQF7 62 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms