RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 KIAA1109Q2LD37 5005 aa13.36□□□□□ -0.27
PTCH1-227ENST00000553256 TRGV11A0A075B6L2 103 aa13.35□□□□□ -0.27
PTCH1-227ENST00000553256 TRGV2A0A075B6R0 118 aa13.35□□□□□ -0.27
PTCH1-227ENST00000553256 A0A0J9YY99 117 aa13.35□□□□□ -0.27
PTCH1-227ENST00000553256 COX8CQ7Z4L0 72 aa13.35□□□□□ -0.27
PTCH1-227ENST00000553256 TCTE3Q8IZS6 198 aa13.35□□□□□ -0.27
PTCH1-227ENST00000553256 SPXQ9BT56 116 aa13.35□□□□□ -0.27
PTCH1-227ENST00000553256 A0A096LPF7 62 aa13.34□□□□□ -0.27
PTCH1-227ENST00000553256 A0A1B0GVY2 172 aa13.34□□□□□ -0.27
PTCH1-227ENST00000553256 FBLL1A6NHQ2 334 aaKnown RBP13.34□□□□□ -0.27
PTCH1-227ENST00000553256 UBE2G2P60604 165 aa13.34□□□□□ -0.27
PTCH1-227ENST00000553256 TMUB2Q71RG4 321 aa13.34□□□□□ -0.27
PTCH1-227ENST00000553256 ZNF575Q86XF7 245 aa13.34□□□□□ -0.27
PTCH1-227ENST00000553256 UBE2DNLQ8IWF7 75 aa13.34□□□□□ -0.27
PTCH1-227ENST00000553256 STOML3Q8TAV4 291 aa13.34□□□□□ -0.27
PTCH1-227ENST00000553256 IGLV2-18A0A075B6J9 118 aa13.33□□□□□ -0.28
PTCH1-227ENST00000553256 TRAV34A0A0B4J273 112 aa13.33□□□□□ -0.28
PTCH1-227ENST00000553256 M0R2N4 97 aa13.33□□□□□ -0.28
PTCH1-227ENST00000553256 GCGP01275 180 aa13.33□□□□□ -0.28
PTCH1-227ENST00000553256 PFN1P07737 140 aaKnown RBP13.33□□□□□ -0.28
PTCH1-227ENST00000553256 ESRGQ1W209 222 aa13.33□□□□□ -0.28
PTCH1-227ENST00000553256 LGALSLQ3ZCW2 172 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-227ENST00000553256 IQCF2Q8IXL9 164 aa13.33□□□□□ -0.28
PTCH1-227ENST00000553256 NKX6-2Q9C056 277 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-227ENST00000553256 ARL2-SNX15V9GYD0 113 aa13.33□□□□□ -0.28
PTCH1-227ENST00000553256 UMAD1C9J7I0 102 aa13.32□□□□□ -0.28
PTCH1-227ENST00000553256 K7EQM0 130 aa13.32□□□□□ -0.28
PTCH1-227ENST00000553256 PEX7O00628 323 aa13.32□□□□□ -0.28
PTCH1-227ENST00000553256 PRNTQ86SH4 94 aa13.32□□□□□ -0.28
PTCH1-227ENST00000553256 HIST1H2BAQ96A08 127 aa13.32□□□□□ -0.28
PTCH1-227ENST00000553256 UPK3BQ9BT76 320 aa13.32□□□□□ -0.28
PTCH1-227ENST00000553256 ZNF471Q9BX82 626 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-227ENST00000553256 KANTRA0A1W2PQU2 76 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 CRIP1P50238 77 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 CRYBA4P53673 196 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 Q86TA4 180 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 ZNF479Q96JC4 524 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 C9orf85Q96MD7 179 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 NDFIP1Q9BT67 221 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 NAGKQ9UJ70 344 aa13.31□□□□□ -0.28
PTCH1-227ENST00000553256 IGKV3D-20A0A0C4DH25 116 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 TRBV6-1A0A0K0K1D8 114 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 IGHV3-53P01767 116 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 CCL18P55774 89 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 SMUG1Q53HV7 270 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 SAPCD1Q5SSQ6 148 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 DPPA3Q6W0C5 159 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 LINC00336Q6ZUF6 198 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 KCNS1Q96KK3 526 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 SDF2L1Q9HCN8 221 aa13.3□□□□□ -0.28
PTCH1-227ENST00000553256 M0R2P5 195 aa13.29□□□□□ -0.28
PTCH1-227ENST00000553256 SFTA3P0C7M3 94 aa13.29□□□□□ -0.28
PTCH1-227ENST00000553256 RNASE3P12724 160 aaKnown RBP13.29□□□□□ -0.28
PTCH1-227ENST00000553256 TCEAL7Q9BRU2 100 aa13.29□□□□□ -0.28
PTCH1-227ENST00000553256 PRO0255Q9UI72 69 aa13.29□□□□□ -0.28
PTCH1-227ENST00000553256 NBDYA0A0U1RRE5 68 aa13.28□□□□□ -0.28
PTCH1-227ENST00000553256 IFNA7P01567 189 aa13.28□□□□□ -0.28
PTCH1-227ENST00000553256 FAM213BQ8TBF2 198 aa13.28□□□□□ -0.28
PTCH1-227ENST00000553256 PTH2Q96A98 100 aa13.28□□□□□ -0.28
PTCH1-227ENST00000553256 KRTAP1-5Q9BYS1 174 aa13.28□□□□□ -0.28
PTCH1-227ENST00000553256 MRPS16Q9Y3D3 137 aaKnown RBP13.28□□□□□ -0.28
PTCH1-227ENST00000553256 TRAV4A0A0B4J268 109 aa13.27□□□□□ -0.29
PTCH1-227ENST00000553256 C1QBP02746 253 aa13.27□□□□□ -0.29
PTCH1-227ENST00000553256 TPT1P13693 172 aaKnown RBP13.27□□□□□ -0.29
PTCH1-227ENST00000553256 SFT2D1Q8WV19 159 aa13.27□□□□□ -0.29
PTCH1-227ENST00000553256 ZC2HC1AQ96GY0 325 aa13.27□□□□□ -0.29
PTCH1-227ENST00000553256 HHLA3Q9XRX5 114 aa13.27□□□□□ -0.29
PTCH1-227ENST00000553256 LRP1BQ9NZR2 4599 aa13.26□□□□□ -0.29
PTCH1-227ENST00000553256 PAX4O43316 350 aa13.26□□□□□ -0.29
PTCH1-227ENST00000553256 PAGE4O60829 102 aa13.26□□□□□ -0.29
PTCH1-227ENST00000553256 LTAP01374 205 aa13.26□□□□□ -0.29
PTCH1-227ENST00000553256 SLAQ13239 276 aa13.26□□□□□ -0.29
PTCH1-227ENST00000553256 DNAH5Q8TE73 4624 aa13.26□□□□□ -0.29
PTCH1-227ENST00000553256 TRAV1-1A0A0B4J248 108 aa13.25□□□□□ -0.29
PTCH1-227ENST00000553256 EIF5AP63241 154 aaKnown RBP13.25□□□□□ -0.29
PTCH1-227ENST00000553256 Q9H8V8 135 aa13.25□□□□□ -0.29
PTCH1-227ENST00000553256 ZFP30Q9Y2G7 519 aa13.25□□□□□ -0.29
PTCH1-227ENST00000553256 RYR1P21817 5038 aa13.25□□□□□ -0.29
PTCH1-227ENST00000553256 PPT1P50897 306 aa13.24□□□□□ -0.29
PTCH1-227ENST00000553256 CCL20P78556 96 aa13.24□□□□□ -0.29
PTCH1-227ENST00000553256 DNLZQ5SXM8 178 aa13.24□□□□□ -0.29
PTCH1-227ENST00000553256 FMC1Q96HJ9 113 aa13.24□□□□□ -0.29
PTCH1-227ENST00000553256 FABP5P3A8MUU1 101 aa13.23□□□□□ -0.29
PTCH1-227ENST00000553256 RS1O15537 224 aa13.23□□□□□ -0.29
PTCH1-227ENST00000553256 PFDN1O60925 122 aa13.23□□□□□ -0.29
PTCH1-227ENST00000553256 H2AFB1P0C5Y9 115 aa13.23□□□□□ -0.29
PTCH1-227ENST00000553256 ZNF674Q2M3X9 581 aa13.23□□□□□ -0.29
PTCH1-227ENST00000553256 ZFP69Q49AA0 526 aa13.23□□□□□ -0.29
PTCH1-227ENST00000553256 MLST8Q9BVC4 326 aa13.23□□□□□ -0.29
PTCH1-227ENST00000553256 PGPEP1LA6NFU8 196 aa13.22□□□□□ -0.29
PTCH1-227ENST00000553256 PRSS29PA6NIE9 313 aa13.22□□□□□ -0.29
PTCH1-227ENST00000553256 K7EQD1 137 aa13.22□□□□□ -0.29
PTCH1-227ENST00000553256 GATA1P15976 413 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-227ENST00000553256 CFAP126Q5VTH2 177 aa13.22□□□□□ -0.29
PTCH1-227ENST00000553256 CST9LP1Q5W188 147 aa13.22□□□□□ -0.29
PTCH1-227ENST00000553256 ICOSQ9Y6W8 199 aa13.22□□□□□ -0.29
PTCH1-227ENST00000553256 A0A1B0GV50 99 aa13.21□□□□□ -0.29
PTCH1-227ENST00000553256 KRBOX1C9JBD0 128 aa13.21□□□□□ -0.29
PTCH1-227ENST00000553256 SULT1A2P50226 295 aa13.21□□□□□ -0.29
PTCH1-227ENST00000553256 ZNF876PQ49A33 203 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms