RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 A0A087WWL8 130 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 C7orf71A4D174 169 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 C2orf70A6NJV1 201 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 NUDT3O95989 172 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 IGLC3P0DOY3 106 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 LEPP41159 167 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 PCP4P48539 62 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 Q5PR19 223 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 FAM104BQ5XKR9 115 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 ATP5L2Q7Z4Y8 100 aa4.27□□□□□ -1.73
LIMA1-215ENST00000552823 TRBV7-1A0A0A6YYK4 115 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 C20orf202A1L168 122 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 SRSF1Q07955 248 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIMA1-215ENST00000552823 ANXA2RQ3ZCQ2 193 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 LYPD1Q8N2G4 141 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 ZNF843Q8N446 348 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 UQCR10Q9UDW1 63 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 PHLDA3Q9Y5J5 127 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 TRAV9-2A0A087WT02 112 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 KNCNA6PVL3 124 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 FCER1GP30273 86 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 PDE6HQ13956 83 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 MPV17L2Q567V2 206 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 SMIM15Q7Z3B0 74 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 RAB37Q96AX2 223 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 TMEM191AQ9H0A3 160 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 DKK2Q9UBU2 259 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 FBLL1A6NHQ2 334 aaKnown RBP4.26□□□□□ -1.73
LIMA1-215ENST00000552823 TCF21O43680 179 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 SLURP1P55000 103 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 SPINK13Q1W4C9 94 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 WFDC11Q8NEX6 87 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 TMEM160Q9NX00 188 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 LAMTOR2Q9Y2Q5 125 aa4.26□□□□□ -1.73
LIMA1-215ENST00000552823 KIR2DL5BA0A0G2JN68 375 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 KIR2DL5BA0A0G2JPC4 375 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 A6NDX4 124 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 CD7P09564 240 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 NPSP0C0P6 89 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 ZC2HC1BQ5TFG8 222 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 KIR2DL5AQ8N109 375 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 KLHDC1Q8N7A1 406 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 LINC01356Q8N9X3 169 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 DPF1Q92782 380 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 RPL39LQ96EH5 51 aaKnown RBP4.25□□□□□ -1.73
LIMA1-215ENST00000552823 FOXC2Q99958 501 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 PEF1Q9UBV8 284 aaKnown RBP4.25□□□□□ -1.73
LIMA1-215ENST00000552823 NPIPB6E9PJ23 425 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 TNFRSF6BO95407 300 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 NUTF2P61970 127 aaKnown RBP4.25□□□□□ -1.73
LIMA1-215ENST00000552823 CT83Q5H943 113 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 TMEM158Q8WZ71 300 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 SLC50A1Q9BRV3 221 aa4.25□□□□□ -1.73
LIMA1-215ENST00000552823 F8P00451 2351 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 IGHG2P01859 326 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 TSPOP30536 169 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 VAMP3Q15836 100 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 GTSCR1Q86UQ5 136 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 MAP1LC3AQ9H492 121 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 HSPB8Q9UJY1 196 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 ZNF256Q9Y2P7 627 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-215ENST00000552823 GOLT1BQ9Y3E0 138 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 IGHV4OR15-8A0A075B7B6 117 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 A0A087WW49 117 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 ESDP10768 282 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 KLF5Q13887 457 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-215ENST00000552823 RASL11AQ6T310 242 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 ZNF48Q96MX3 618 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-215ENST00000552823 C20orf144Q9BQM9 153 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 GFRA4Q9GZZ7 299 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 TRAV8-6A0A0B4J262 113 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 SLC25A34Q6PIV7 304 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 IFI27L1Q96BM0 104 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 ZNF747Q9BV97 191 aa4.24□□□□□ -1.73
LIMA1-215ENST00000552823 A0A0G2JLM5 398 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 IGHV7-4-1A0A0J9YVY3 117 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 S100A7P31151 101 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 GPHB5Q86YW7 130 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 PCP2Q8IVA1 136 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 OR2K2Q8NGT1 345 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 C2orf88Q9BSF0 95 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 DAZ1Q9NQZ3 744 aaKnown RBP4.23□□□□□ -1.73
LIMA1-215ENST00000552823 TENM4Q6N022 2769 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 FAM223BA6NKX1 122 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 K7EP13 123 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 DEFB131AP59861 70 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 FAM159AQ6UWV7 190 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 APRG1Q8IVJ8 170 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 FAM223AQ8IWN6 122 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 CHCHD1Q96BP2 118 aaKnown RBP4.23□□□□□ -1.73
LIMA1-215ENST00000552823 SMR3AQ99954 134 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 TMEM208Q9BTX3 173 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 MEGF9Q9H1U4 602 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 SMPXQ9UHP9 88 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 MUC4Q99102 2169 aa4.23□□□□□ -1.73
LIMA1-215ENST00000552823 ZNF469Q96JG9 3925 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-215ENST00000552823 TMEM8BA6NDV4 472 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 NDUFS8O00217 210 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 NDUFA4O00483 81 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 HBDP02042 147 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms