RNA–Protein interactions for RNA: ENST00000549347.1

RAPGEF3-220, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 4

Gene RAPGEF3, Length 573 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-220ENST00000549347 PDE6DO43924 150 aa12.52□□□□□ -0.41
RAPGEF3-220ENST00000549347 TYMSP04818 313 aa12.52□□□□□ -0.41
RAPGEF3-220ENST00000549347 TEX261Q6UWH6 196 aa12.52□□□□□ -0.41
RAPGEF3-220ENST00000549347 ZC2HC1AQ96GY0 325 aa12.52□□□□□ -0.41
RAPGEF3-220ENST00000549347 SDF2L1Q9HCN8 221 aa12.52□□□□□ -0.41
RAPGEF3-220ENST00000549347 C11orf21Q9P2W6 132 aa12.52□□□□□ -0.41
RAPGEF3-220ENST00000549347 SPINK4O60575 86 aa12.51□□□□□ -0.41
RAPGEF3-220ENST00000549347 TCTAP57738 103 aa12.51□□□□□ -0.41
RAPGEF3-220ENST00000549347 Q6ZTI0 123 aa12.51□□□□□ -0.41
RAPGEF3-220ENST00000549347 C18orf15Q96N68 181 aa12.51□□□□□ -0.41
RAPGEF3-220ENST00000549347 MDFICQ9P1T7 246 aa12.51□□□□□ -0.41
RAPGEF3-220ENST00000549347 IGHV3-16A0A0C4DH30 117 aa12.5□□□□□ -0.41
RAPGEF3-220ENST00000549347 FABP5P3A8MUU1 101 aa12.5□□□□□ -0.41
RAPGEF3-220ENST00000549347 RPL35P42766 123 aaKnown RBP12.5□□□□□ -0.41
RAPGEF3-220ENST00000549347 LGALS9BQ3B8N2 356 aa12.5□□□□□ -0.41
RAPGEF3-220ENST00000549347 DERL1Q9BUN8 251 aa12.5□□□□□ -0.41
RAPGEF3-220ENST00000549347 MLST8Q9BVC4 326 aa12.5□□□□□ -0.41
RAPGEF3-220ENST00000549347 IGHV4-4A0A075B6R2 117 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 GAGE12BA1L429 117 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 IGLL5B9A064 214 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 GNRH2O43555 120 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 GAGE7O76087 117 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 ATP5G1P05496 136 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 GAGE12FP0CL80 117 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 GAGE12GP0CL81 117 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 GAGE12IP0CL82 117 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 CRIP1P50238 77 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 ZNF674Q2M3X9 581 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 BAGE2Q86Y30 109 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 FAM210BQ96KR6 192 aa12.49□□□□□ -0.41
RAPGEF3-220ENST00000549347 TRGV1A0A0A0MS02 117 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 SH2D1AO60880 128 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 HTN3P15516 51 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 ZNF506Q5JVG8 444 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 FAM162BQ5T6X4 162 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 NHLRC2Q8NBF2 726 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 SPXQ9BT56 116 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 ALMS1Q8TCU4 4167 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 SACSQ9NZJ4 4579 aa12.48□□□□□ -0.41
RAPGEF3-220ENST00000549347 LYSTQ99698 3801 aa12.47□□□□□ -0.41
RAPGEF3-220ENST00000549347 IGKV3D-20A0A0C4DH25 116 aa12.47□□□□□ -0.41
RAPGEF3-220ENST00000549347 LCE6AA0A183 80 aa12.47□□□□□ -0.41
RAPGEF3-220ENST00000549347 RBFOX3A6NFN3 312 aa12.47□□□□□ -0.41
RAPGEF3-220ENST00000549347 CENPWQ5EE01 88 aa12.47□□□□□ -0.41
RAPGEF3-220ENST00000549347 MRPL16Q9NX20 251 aaKnown RBP12.47□□□□□ -0.41
RAPGEF3-220ENST00000549347 APLNQ9ULZ1 77 aa12.47□□□□□ -0.41
RAPGEF3-220ENST00000549347 SMIM12Q96EX1 92 aa12.46□□□□□ -0.41
RAPGEF3-220ENST00000549347 TRGV2A0A075B6R0 118 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 NDUFS6O75380 124 aaKnown RBP12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 LINC01559Q495D7 138 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 RASL10AQ92737 203 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 C9orf85Q96MD7 179 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 FAM210AQ96ND0 272 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 NDUFAF3Q9BU61 184 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 MED9Q9NWA0 146 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 DNAH1Q9P2D7 4330 aa12.45□□□□□ -0.42
RAPGEF3-220ENST00000549347 TENM2Q9NT68 2774 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 TRBV20OR9-2A0A075B6H5 130 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 B4DEV8 164 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 KRBOX1C9JBD0 128 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 F5H768 121 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 TMEM250H0YL14 139 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 M0R2P5 195 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 RNASE3P12724 160 aaKnown RBP12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 TOR2AQ5JU69 321 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 TMEM88Q6PEY1 159 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 LINC00476Q8WZB0 136 aa12.44□□□□□ -0.42
RAPGEF3-220ENST00000549347 IGLV2-8P01709 118 aa12.43□□□□□ -0.42
RAPGEF3-220ENST00000549347 ORM1P02763 201 aa12.43□□□□□ -0.42
RAPGEF3-220ENST00000549347 GNG4P50150 75 aa12.43□□□□□ -0.42
RAPGEF3-220ENST00000549347 DNLZQ5SXM8 178 aa12.43□□□□□ -0.42
RAPGEF3-220ENST00000549347 RAB19A4D1S5 217 aa12.42□□□□□ -0.42
RAPGEF3-220ENST00000549347 M0R036 132 aa12.42□□□□□ -0.42
RAPGEF3-220ENST00000549347 HOXA5P20719 270 aa12.42□□□□□ -0.42
RAPGEF3-220ENST00000549347 ASIPP42127 132 aa12.42□□□□□ -0.42
RAPGEF3-220ENST00000549347 PCNPQ8WW12 178 aaKnown RBP12.42□□□□□ -0.42
RAPGEF3-220ENST00000549347 C9JCJ5 164 aa12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 ZNF575Q86XF7 245 aa12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 C15orf53Q8NAA6 179 aa12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 PTH2Q96A98 100 aa12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 EIF5A2Q9GZV4 153 aaKnown RBP12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 PARLQ9H300 379 aa12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 IL36BQ9NZH7 164 aa12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 RYR2Q92736 4967 aa12.41□□□□□ -0.42
RAPGEF3-220ENST00000549347 CXCL1P09341 107 aa12.4□□□□□ -0.42
RAPGEF3-220ENST00000549347 S100A4P26447 101 aaKnown RBP12.4□□□□□ -0.42
RAPGEF3-220ENST00000549347 LGALS9CQ6DKI2 356 aa12.4□□□□□ -0.42
RAPGEF3-220ENST00000549347 PRR27Q6MZM9 219 aa12.4□□□□□ -0.42
RAPGEF3-220ENST00000549347 MUC4Q99102 2169 aa12.4□□□□□ -0.42
RAPGEF3-220ENST00000549347 TRAV4A0A0B4J268 109 aa12.39□□□□□ -0.43
RAPGEF3-220ENST00000549347 HYDINQ4G0P3 5121 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 RYR3Q15413 4870 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 PGPEP1LA6NFU8 196 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 H3BNG1 76 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 H3BVH4 76 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 MGST1P10620 155 aaKnown RBP12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 OR5I1Q13606 314 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 ZNF876PQ49A33 203 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 PIK3CD-AS1Q5SR53 167 aa12.38□□□□□ -0.43
RAPGEF3-220ENST00000549347 POM121L12Q8N7R1 296 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms