RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SDF2L1Q9HCN8 221 aa11.19□□□□□ -0.62
VPS29-204ENST00000548259 LYRM2Q9NU23 88 aaPredicted RBP11.19□□□□□ -0.62
VPS29-204ENST00000548259 CCSO14618 274 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 OR10J4P0C629 311 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 RANP62826 216 aaKnown RBP11.18□□□□□ -0.62
VPS29-204ENST00000548259 MIR17HGQ75NE6 70 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 SLC25A29Q8N8R3 303 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 Q8N976 141 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 ATP6V0E2Q8NHE4 81 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 KCNS1Q96KK3 526 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 FAM167A-AS1Q96KT0 104 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 NPCDR1Q9BY65 106 aa11.18□□□□□ -0.62
VPS29-204ENST00000548259 TRAV21A0A0B4J279 112 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 GGTLC3B5MD39 225 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 OR7C2O60412 319 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 S100A10P60903 97 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 GCSAMLQ5JQS6 135 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 TMEM252Q8N6L7 170 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 TMED6Q8WW62 240 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 PHYHIPLQ96FC7 376 aa11.17□□□□□ -0.62
VPS29-204ENST00000548259 SEC11BP0C7V7 166 aa11.16□□□□□ -0.62
VPS29-204ENST00000548259 WFDC2Q14508 124 aa11.16□□□□□ -0.62
VPS29-204ENST00000548259 FXYD5Q96DB9 178 aa11.16□□□□□ -0.62
VPS29-204ENST00000548259 C2orf50Q96LR7 162 aa11.16□□□□□ -0.62
VPS29-204ENST00000548259 DNAH8Q96JB1 4490 aa11.15□□□□□ -0.62
VPS29-204ENST00000548259 GNRH2O43555 120 aa11.15□□□□□ -0.62
VPS29-204ENST00000548259 MGST1P10620 155 aaKnown RBP11.15□□□□□ -0.62
VPS29-204ENST00000548259 ZNF876PQ49A33 203 aa11.15□□□□□ -0.62
VPS29-204ENST00000548259 FAM74A1Q5RGS3 127 aa11.15□□□□□ -0.62
VPS29-204ENST00000548259 CMTM2Q8TAZ6 248 aa11.15□□□□□ -0.62
VPS29-204ENST00000548259 IGSF23A1L1A6 192 aa11.14□□□□□ -0.63
VPS29-204ENST00000548259 DIRC3C9JPN6 131 aa11.14□□□□□ -0.63
VPS29-204ENST00000548259 IGLV2-8P01709 118 aa11.14□□□□□ -0.63
VPS29-204ENST00000548259 UBE2L3P68036 154 aaKnown RBP11.14□□□□□ -0.63
VPS29-204ENST00000548259 ASB13Q8WXK3 278 aa11.14□□□□□ -0.63
VPS29-204ENST00000548259 BAALCQ8WXS3 180 aa11.14□□□□□ -0.63
VPS29-204ENST00000548259 C11orf1Q9H5F2 150 aa11.14□□□□□ -0.63
VPS29-204ENST00000548259 URGCP-MRPS24S4R325 110 aa11.14□□□□□ -0.63
VPS29-204ENST00000548259 A0A087WWC5 75 aa11.13□□□□□ -0.63
VPS29-204ENST00000548259 TRAV8-1A0A0A6YYK1 113 aa11.13□□□□□ -0.63
VPS29-204ENST00000548259 LINC01620Q4KN68 170 aa11.13□□□□□ -0.63
VPS29-204ENST00000548259 CIRBP-AS1Q8TBR5 109 aa11.13□□□□□ -0.63
VPS29-204ENST00000548259 HYLS1Q96M11 299 aa11.13□□□□□ -0.63
VPS29-204ENST00000548259 LRP1Q07954 4544 aaKnown RBP11.12□□□□□ -0.63
VPS29-204ENST00000548259 CCDC160A6NGH7 325 aa11.12□□□□□ -0.63
VPS29-204ENST00000548259 C17orf112F2Z3M2 114 aa11.12□□□□□ -0.63
VPS29-204ENST00000548259 TYMSP04818 313 aa11.12□□□□□ -0.63
VPS29-204ENST00000548259 TAS2R45P59539 299 aa11.12□□□□□ -0.63
VPS29-204ENST00000548259 CFAP126Q5VTH2 177 aa11.12□□□□□ -0.63
VPS29-204ENST00000548259 THAP6Q8TBB0 222 aa11.12□□□□□ -0.63
VPS29-204ENST00000548259 NMES1Q9C002 83 aa11.12□□□□□ -0.63
VPS29-204ENST00000548259 KRTAP10-4P60372 401 aaPredicted RBP11.11□□□□□ -0.63
VPS29-204ENST00000548259 KHDC3LQ587J8 217 aa11.11□□□□□ -0.63
VPS29-204ENST00000548259 TREM1Q9NP99 234 aa11.11□□□□□ -0.63
VPS29-204ENST00000548259 IGHV3-73A0A0B4J1V6 119 aa11.1□□□□□ -0.63
VPS29-204ENST00000548259 BTCP35070 178 aa11.1□□□□□ -0.63
VPS29-204ENST00000548259 RPL37AP61513 92 aaKnown RBP11.1□□□□□ -0.63
VPS29-204ENST00000548259 RAB32Q13637 225 aa11.1□□□□□ -0.63
VPS29-204ENST00000548259 DAZ4Q86SG3 579 aaKnown RBP11.1□□□□□ -0.63
VPS29-204ENST00000548259 OR5C1Q8NGR4 320 aa11.1□□□□□ -0.63
VPS29-204ENST00000548259 NDFIP1Q9BT67 221 aa11.1□□□□□ -0.63
VPS29-204ENST00000548259 DAZ3Q9NR90 486 aaKnown RBP11.1□□□□□ -0.63
VPS29-204ENST00000548259 OTORQ9NRC9 128 aa11.1□□□□□ -0.63
VPS29-204ENST00000548259 RPH3ALQ9UNE2 315 aa11.1□□□□□ -0.63
VPS29-204ENST00000548259 IGKV2D-24A0A075B6R9 120 aa11.09□□□□□ -0.63
VPS29-204ENST00000548259 RNF222A6NCQ9 220 aa11.09□□□□□ -0.63
VPS29-204ENST00000548259 IGLV2-11P01706 119 aa11.09□□□□□ -0.63
VPS29-204ENST00000548259 C14orf177Q52M58 125 aa11.09□□□□□ -0.63
VPS29-204ENST00000548259 ARL6IP6Q8N6S5 226 aa11.09□□□□□ -0.63
VPS29-204ENST00000548259 PGPA6NDG6 321 aa11.08□□□□□ -0.64
VPS29-204ENST00000548259 ELOBQ15370 118 aa11.08□□□□□ -0.64
VPS29-204ENST00000548259 KCNIP4Q6PIL6 250 aa11.08□□□□□ -0.64
VPS29-204ENST00000548259 F6UZH7 168 aa11.07□□□□□ -0.64
VPS29-204ENST00000548259 FGF8P55075 233 aaPredicted RBP11.07□□□□□ -0.64
VPS29-204ENST00000548259 NHLH2Q02577 135 aa11.07□□□□□ -0.64
VPS29-204ENST00000548259 GOLT1AQ6ZVE7 132 aa11.07□□□□□ -0.64
VPS29-204ENST00000548259 GAGE12JA6NER3 117 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 TAAR5O14804 337 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 GAGE1Q13065 139 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 GAGE4Q13068 117 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 GAGE5Q13069 117 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 GAGE13Q4V321 117 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 Q8N3U1 123 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 CYB561D1Q8N8Q1 229 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 OR10G9Q8NGN4 311 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 PTH2Q96A98 100 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 SEC22CQ9BRL7 303 aa11.06□□□□□ -0.64
VPS29-204ENST00000548259 WDR61Q9GZS3 305 aaKnown RBP11.06□□□□□ -0.64
VPS29-204ENST00000548259 TRAV6A0A075B6T7 132 aa11.05□□□□□ -0.64
VPS29-204ENST00000548259 TCRBP04435 133 aa11.05□□□□□ -0.64
VPS29-204ENST00000548259 IL7P13232 177 aa11.05□□□□□ -0.64
VPS29-204ENST00000548259 ZFP2Q6ZN57 461 aa11.05□□□□□ -0.64
VPS29-204ENST00000548259 MBD2Q9UBB5 411 aa11.05□□□□□ -0.64
VPS29-204ENST00000548259 A0A087WX48 190 aa11.04□□□□□ -0.64
VPS29-204ENST00000548259 SERTM2A0A1B0GWG4 89 aa11.04□□□□□ -0.64
VPS29-204ENST00000548259 A8MWV9 139 aa11.04□□□□□ -0.64
VPS29-204ENST00000548259 IL15RAQ13261 267 aa11.04□□□□□ -0.64
VPS29-204ENST00000548259 ZNF506Q5JVG8 444 aa11.04□□□□□ -0.64
VPS29-204ENST00000548259 FFAR4Q5NUL3 377 aa11.04□□□□□ -0.64
VPS29-204ENST00000548259 DPPA3Q6W0C5 159 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms