RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 C9orf47Q6ZRZ4 202 aa12.5□□□□□ -0.41
CHMP1A-204ENST00000547687 LGALS1P09382 135 aaKnown RBP12.5□□□□□ -0.41
CHMP1A-204ENST00000547687 TM4SF20Q53R12 229 aa12.5□□□□□ -0.41
CHMP1A-204ENST00000547687 GPHB5Q86YW7 130 aa12.5□□□□□ -0.41
CHMP1A-204ENST00000547687 C20orf173Q96LM9 149 aa12.5□□□□□ -0.41
CHMP1A-204ENST00000547687 IGHV7-4-1A0A0J9YVY3 117 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 DDTP30046 118 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 TCTEX1D4Q5JR98 221 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 ZNF493Q6ZR52 646 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 ZNF575Q86XF7 245 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 FER1L6-AS1Q8NA97 138 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 URB1-AS1Q96HZ7 61 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 RHPN1-AS1Q9BWJ2 59 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 PRSS47A8MTI9 375 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 RPL11P62913 178 aaKnown RBP12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 FAM106AQ4KMX7 169 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 ZNF738Q8NE65 137 aa12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 DAZ1Q9NQZ3 744 aaKnown RBP12.49□□□□□ -0.41
CHMP1A-204ENST00000547687 TMEM213A2RRL7 107 aa12.48□□□□□ -0.41
CHMP1A-204ENST00000547687 M0R2Z0 102 aa12.48□□□□□ -0.41
CHMP1A-204ENST00000547687 SOCS3O14543 225 aa12.48□□□□□ -0.41
CHMP1A-204ENST00000547687 IGLC6P0CF74 106 aa12.48□□□□□ -0.41
CHMP1A-204ENST00000547687 C18orf65Q6ZTR6 163 aa12.48□□□□□ -0.41
CHMP1A-204ENST00000547687 NOTCH3Q9UM47 2321 aa12.48□□□□□ -0.41
CHMP1A-204ENST00000547687 MUC21A0A0G2JKD1 596 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 MUC21A0A140T8X8 626 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 K7EMT4 169 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 CTRLP40313 264 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 HIST1H1AQ02539 215 aaPredicted RBP12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 LINC01559Q495D7 138 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 MUC21Q5SSG8 566 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 CHCHD1Q96BP2 118 aaKnown RBP12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 SMPXQ9UHP9 88 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 IGHV4OR15-8A0A075B7B6 117 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 A0A087WW49 117 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 M0QZ24 198 aa12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 NUTF2P61970 127 aaKnown RBP12.47□□□□□ -0.41
CHMP1A-204ENST00000547687 LINC00614P0C842 121 aa12.46□□□□□ -0.41
CHMP1A-204ENST00000547687 CD28P10747 220 aa12.46□□□□□ -0.41
CHMP1A-204ENST00000547687 TEX43Q6ZNM6 134 aa12.46□□□□□ -0.41
CHMP1A-204ENST00000547687 OVOL1O14753 267 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 C3orf79P0CE67 100 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 EDN2P20800 178 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 TWIST1Q15672 202 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 KHDC1LQ5JSQ8 128 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 Q8N976 141 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 DEFB136Q30KP8 78 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 FAM104BQ5XKR9 115 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 OR10J6PQ8NGY7 276 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 LINC00477Q96M19 166 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 UFC1Q9Y3C8 167 aa12.45□□□□□ -0.42
CHMP1A-204ENST00000547687 IGKV3-7A0A075B6H7 116 aa12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 NSUN5P1Q3KNT7 163 aa12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 CHTOPQ9Y3Y2 248 aaKnown RBP12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 LENEPQ9Y5L5 61 aa12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 IGKV3D-20A0A0C4DH25 116 aa12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 HOXD3P31249 432 aaPredicted RBP12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 TDRG1Q3Y452 100 aa12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 AMN1Q8IY45 258 aa12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 C11orf21Q9P2W6 132 aa12.44□□□□□ -0.42
CHMP1A-204ENST00000547687 TGP01266 2768 aa12.43□□□□□ -0.42
CHMP1A-204ENST00000547687 SYNJ2BPP57105 145 aa12.43□□□□□ -0.42
CHMP1A-204ENST00000547687 DMRTA1Q5VZB9 504 aa12.43□□□□□ -0.42
CHMP1A-204ENST00000547687 SELENOKQ9Y6D0 94 aa12.43□□□□□ -0.42
CHMP1A-204ENST00000547687 CSN3P07498 182 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 PMCHL1Q16048 86 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 C4orf3Q8WVX3 66 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 CITED2Q99967 270 aaPredicted RBP12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 CNFNQ9BYD5 112 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 U3KQK5 164 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 PRKDCP78527 4128 aaKnown RBP12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 IGHV1-24A0A0C4DH33 117 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 KIR2DL5BA0A0G2JN68 375 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 KIR2DL5BA0A0G2JPC4 375 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 A0A1W2PRX2 142 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 EBLN2Q6P2I7 272 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 KIR2DL5AQ8N109 375 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 KLHL30-AS1Q8NEE0 82 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 OR11H1Q8NG94 326 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 VAMP8Q9BV40 100 aa12.42□□□□□ -0.42
CHMP1A-204ENST00000547687 D6R8Y8 96 aa12.41□□□□□ -0.42
CHMP1A-204ENST00000547687 MRPL51Q4U2R6 128 aaKnown RBP12.41□□□□□ -0.42
CHMP1A-204ENST00000547687 DUX3Q96PT4 197 aa12.41□□□□□ -0.42
CHMP1A-204ENST00000547687 MSRB1Q9NZV6 116 aa12.41□□□□□ -0.42
CHMP1A-204ENST00000547687 SLURP1P55000 103 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 DEFB1P60022 68 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 ORMDL3Q8N138 153 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 TMEM191AQ9H0A3 160 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 C2orf70A6NJV1 201 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 LGALS9O00182 355 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 PRR9Q5T870 116 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 Q6ZQT7 251 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 OR8A1Q8NGG7 326 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 PRSS3P2Q8NHM4 247 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 PRELID3AQ96N28 172 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 NDUFAF3Q9BU61 184 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 PAM16Q9Y3D7 125 aa12.4□□□□□ -0.42
CHMP1A-204ENST00000547687 LINC01619G3V211 115 aa12.39□□□□□ -0.43
CHMP1A-204ENST00000547687 ID1P41134 155 aa12.39□□□□□ -0.43
CHMP1A-204ENST00000547687 ZFAND2AQ8N6M9 145 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms