RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 LCNL1Q6ZST4 164 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 ABCA2Q9BZC7 2435 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 DPM2O94777 84 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 UCNP55089 124 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 LAGE3Q14657 143 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 LY6EQ16553 131 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 GLMPQ8WWB7 406 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 CRYBG3Q68DQ2 2970 aa12.03□□□□□ -0.48
LDLR-204ENST00000545707 F6UB75 175 aa12.02□□□□□ -0.48
LDLR-204ENST00000545707 ARL3P36405 182 aa12.02□□□□□ -0.48
LDLR-204ENST00000545707 GPHB5Q86YW7 130 aa12.02□□□□□ -0.48
LDLR-204ENST00000545707 PIFOQ8TCI5 191 aa12.02□□□□□ -0.48
LDLR-204ENST00000545707 TRBV25-1A0A075B6N4 114 aa12.02□□□□□ -0.49
LDLR-204ENST00000545707 RPL11P62913 178 aaKnown RBP12.02□□□□□ -0.49
LDLR-204ENST00000545707 MAPKAPK5-AS1Q8N8E1 139 aa12.02□□□□□ -0.49
LDLR-204ENST00000545707 MYOZ3Q8TDC0 251 aa12.02□□□□□ -0.49
LDLR-204ENST00000545707 CHAC1Q9BUX1 264 aa12.02□□□□□ -0.49
LDLR-204ENST00000545707 GTF2H5Q6ZYL4 71 aa12.01□□□□□ -0.49
LDLR-204ENST00000545707 K7EP34 96 aa12.01□□□□□ -0.49
LDLR-204ENST00000545707 A0A1W2PPM0 123 aa12□□□□□ -0.49
LDLR-204ENST00000545707 ATP5LO75964 103 aa12□□□□□ -0.49
LDLR-204ENST00000545707 DEFB104AQ8WTQ1 72 aa12□□□□□ -0.49
LDLR-204ENST00000545707 ITLN2Q8WWU7 325 aaPredicted RBP12□□□□□ -0.49
LDLR-204ENST00000545707 MRPL53Q96EL3 112 aaKnown RBP12□□□□□ -0.49
LDLR-204ENST00000545707 MOB4Q9Y3A3 225 aa12□□□□□ -0.49
LDLR-204ENST00000545707 C14orf178Q8N769 122 aaPredicted RBP12□□□□□ -0.49
LDLR-204ENST00000545707 RPL39LQ96EH5 51 aaKnown RBP12□□□□□ -0.49
LDLR-204ENST00000545707 SPCS1Q9Y6A9 102 aa12□□□□□ -0.49
LDLR-204ENST00000545707 IGHV4-39P01824 125 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 SMIM13P0DJ93 91 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 ZFAND2AQ8N6M9 145 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 MEGF9Q9H1U4 602 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 HIF1ANQ9NWT6 349 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 SRD5A1P18405 259 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 SRSF1Q07955 248 aaKnown RBP eCLIP11.99□□□□□ -0.492e-6■■□□□ 14.5
LDLR-204ENST00000545707 C19orf54Q5BKX5 351 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 Q6ZS46 218 aa11.99□□□□□ -0.49
LDLR-204ENST00000545707 GNRH2O43555 120 aa11.98□□□□□ -0.49
LDLR-204ENST00000545707 S100A4P26447 101 aaKnown RBP11.98□□□□□ -0.49
LDLR-204ENST00000545707 RNASE4P34096 147 aaKnown RBP11.98□□□□□ -0.49
LDLR-204ENST00000545707 NHP2Q9NX24 153 aaKnown RBP11.98□□□□□ -0.49
LDLR-204ENST00000545707 IGHV4-4A0A075B6R2 117 aa11.98□□□□□ -0.49
LDLR-204ENST00000545707 IGHV4-38-2P0DP08 117 aa11.98□□□□□ -0.49
LDLR-204ENST00000545707 ANXA2RQ3ZCQ2 193 aa11.98□□□□□ -0.49
LDLR-204ENST00000545707 SAMD5Q5TGI4 173 aa11.98□□□□□ -0.49
LDLR-204ENST00000545707 C9orf139Q6ZV77 190 aa11.98□□□□□ -0.49
LDLR-204ENST00000545707 WFDC12Q8WWY7 111 aa11.98□□□□□ -0.49
LDLR-204ENST00000545707 CSMD2Q7Z408 3487 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 K7ERU9 68 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 EDN2P20800 178 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 RASL10AQ92737 203 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 SMIM2Q9BVW6 85 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 SMPXQ9UHP9 88 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 A0A087WX48 190 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 IGHV1-69DA0A0B4J2H0 117 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 IGHV4-61A0A0C4DH41 118 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 FAM223BA6NKX1 122 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 IGHV1-69P01742 117 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 BLCAPP62952 87 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 FAM223AQ8IWN6 122 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 OR10J6PQ8NGY7 276 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 HIGD1BQ9P298 99 aa11.97□□□□□ -0.49
LDLR-204ENST00000545707 UTP20O75691 2785 aaKnown RBP11.97□□□□□ -0.49
LDLR-204ENST00000545707 PRSS47A8MTI9 375 aa11.96□□□□□ -0.49
LDLR-204ENST00000545707 MGPP08493 103 aa11.96□□□□□ -0.49
LDLR-204ENST00000545707 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.96□□□□□ -0.53e-7■■■□□ 14.8
LDLR-204ENST00000545707 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.96□□□□□ -0.5
LDLR-204ENST00000545707 RIPPLY3P57055 190 aa11.96□□□□□ -0.5
LDLR-204ENST00000545707 NEGR1Q7Z3B1 354 aa11.96□□□□□ -0.5
LDLR-204ENST00000545707 PHLDA3Q9Y5J5 127 aa11.96□□□□□ -0.5
LDLR-204ENST00000545707 SOCS3O14543 225 aa11.95□□□□□ -0.5
LDLR-204ENST00000545707 PF4V1P10720 104 aa11.95□□□□□ -0.5
LDLR-204ENST00000545707 FABP2P12104 132 aa11.95□□□□□ -0.5
LDLR-204ENST00000545707 LINC00477Q96M19 166 aa11.95□□□□□ -0.5
LDLR-204ENST00000545707 SUMO2P61956 95 aaKnown RBP11.95□□□□□ -0.5
LDLR-204ENST00000545707 CEND1Q8N111 149 aa11.95□□□□□ -0.5
LDLR-204ENST00000545707 SCGB3A1Q96QR1 104 aa11.95□□□□□ -0.5
LDLR-204ENST00000545707 TRAV21A0A0B4J279 112 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 GNLYP22749 145 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 PHLDA1Q8WV24 401 aaPredicted RBP11.94□□□□□ -0.5
LDLR-204ENST00000545707 MRAP2Q96G30 205 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 SPOCK3Q9BQ16 436 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 FLNCQ14315 2725 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 CFAP46Q8IYW2 2715 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 H3BUX3 64 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 ASIPP42127 132 aa11.94□□□□□ -0.5
LDLR-204ENST00000545707 NDUFA4O00483 81 aa11.93□□□□□ -0.5
LDLR-204ENST00000545707 AGRNO00468 2067 aa11.92□□□□□ -0.5
LDLR-204ENST00000545707 RNF223E7ERA6 249 aa11.92□□□□□ -0.5
LDLR-204ENST00000545707 RHPN1-AS1Q9BWJ2 59 aa11.92□□□□□ -0.5
LDLR-204ENST00000545707 DPH3P1Q9H4G8 78 aa11.92□□□□□ -0.5
LDLR-204ENST00000545707 LENEPQ9Y5L5 61 aa11.92□□□□□ -0.5
LDLR-204ENST00000545707 CSPG4Q6UVK1 2322 aa11.92□□□□□ -0.5
LDLR-204ENST00000545707 H7C1H1 209 aa11.91□□□□□ -0.5
LDLR-204ENST00000545707 OVOL1O14753 267 aa11.91□□□□□ -0.5
LDLR-204ENST00000545707 RNASE3P12724 160 aaKnown RBP11.91□□□□□ -0.5
LDLR-204ENST00000545707 TM2D2Q9BX73 214 aa11.91□□□□□ -0.5
LDLR-204ENST00000545707 JPT2Q9H910 190 aa11.91□□□□□ -0.5
LDLR-204ENST00000545707 CHTOPQ9Y3Y2 248 aaKnown RBP11.91□□□□□ -0.5
LDLR-204ENST00000545707 F8VRH5 84 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms