RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NDPQ00604 133 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 C16orf54Q6UWD8 224 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 TMEM219Q86XT9 240 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 KLHL30-AS1Q8NEE0 82 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 NTN5Q8WTR8 489 aaPredicted RBP11.23□□□□□ -0.61
LIMS1-215ENST00000544547 C1orf159Q96HA4 380 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 SRD5A1P18405 259 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 TCF15Q12870 199 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 COPS9Q8WXC6 57 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 RITA1Q96K30 269 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 SLC25A20O43772 301 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 LY6HO94772 140 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 TMEM101Q96IK0 257 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 IGHG3P01860 377 aa11.22□□□□□ -0.61
LIMS1-215ENST00000544547 IFITM1P13164 125 aa11.22□□□□□ -0.61
LIMS1-215ENST00000544547 KLRD1Q13241 179 aa11.22□□□□□ -0.61
LIMS1-215ENST00000544547 EIF4EBP1Q13541 118 aaPredicted RBP11.22□□□□□ -0.61
LIMS1-215ENST00000544547 C15orf32Q32M92 178 aa11.22□□□□□ -0.61
LIMS1-215ENST00000544547 PAX8Q06710 450 aa11.22□□□□□ -0.61
LIMS1-215ENST00000544547 Q6ZS92 163 aa11.22□□□□□ -0.61
LIMS1-215ENST00000544547 TRAV21A0A0B4J279 112 aa11.21□□□□□ -0.61
LIMS1-215ENST00000544547 ODF1Q14990 250 aa11.21□□□□□ -0.61
LIMS1-215ENST00000544547 A0A0G2JNJ9 132 aa11.21□□□□□ -0.61
LIMS1-215ENST00000544547 TAL2Q16559 108 aa11.21□□□□□ -0.61
LIMS1-215ENST00000544547 IGFBPL1Q8WX77 278 aa11.21□□□□□ -0.61
LIMS1-215ENST00000544547 Q9UFV3 132 aa11.21□□□□□ -0.61
LIMS1-215ENST00000544547 MBD3L4A6NDZ8 208 aaPredicted RBP11.21□□□□□ -0.62
LIMS1-215ENST00000544547 MBD3L3A6NE82 208 aaPredicted RBP11.21□□□□□ -0.62
LIMS1-215ENST00000544547 MBD3L5A6NJ08 208 aaPredicted RBP11.21□□□□□ -0.62
LIMS1-215ENST00000544547 MBD3L2Q8NHZ7 208 aaPredicted RBP11.21□□□□□ -0.62
LIMS1-215ENST00000544547 MLST8Q9BVC4 326 aa11.21□□□□□ -0.62
LIMS1-215ENST00000544547 PEMTQ9UBM1 199 aa11.21□□□□□ -0.62
LIMS1-215ENST00000544547 A0A087WX48 190 aa11.21□□□□□ -0.62
LIMS1-215ENST00000544547 TRAV8-3A0A0A6YYJ7 113 aa11.21□□□□□ -0.62
LIMS1-215ENST00000544547 CPAMD8Q8IZJ3 1885 aa11.2□□□□□ -0.62
LIMS1-215ENST00000544547 VMO1Q7Z5L0 202 aa11.2□□□□□ -0.62
LIMS1-215ENST00000544547 ZNF491Q8N8L2 437 aa11.2□□□□□ -0.62
LIMS1-215ENST00000544547 TMEM14CQ9P0S9 112 aa11.2□□□□□ -0.62
LIMS1-215ENST00000544547 TRAV41A0A0B4J266 112 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 SIGLEC15Q6ZMC9 328 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 IGKV1D-37A0A075B6S9 117 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 PDE6HQ13956 83 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 UFSP1Q6NVU6 142 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 BRD3OSQ6XYD6 125 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 ATXN8Q156A1 80 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 C15orf53Q8NAA6 179 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 HIGD1BQ9P298 99 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 PRO1854Q9UHT4 67 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 H3BRN7 92 aa11.19□□□□□ -0.62
LIMS1-215ENST00000544547 A0A087WWL8 130 aa11.18□□□□□ -0.62
LIMS1-215ENST00000544547 DUSP14O95147 198 aaKnown RBP11.18□□□□□ -0.62
LIMS1-215ENST00000544547 STHQ8IWL8 128 aa11.18□□□□□ -0.62
LIMS1-215ENST00000544547 BUB1B-PAK6H3BSN5 160 aa11.18□□□□□ -0.62
LIMS1-215ENST00000544547 H3BUX3 64 aa11.18□□□□□ -0.62
LIMS1-215ENST00000544547 C5orf64Q2M2E5 130 aa11.18□□□□□ -0.62
LIMS1-215ENST00000544547 TP53TG1Q9Y2A0 90 aa11.18□□□□□ -0.62
LIMS1-215ENST00000544547 M0R2P5 195 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 IGKV1-17P01599 117 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 TEN1Q86WV5 123 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 DPH3P1Q9H4G8 78 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 K7EM74 188 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 MSMPQ1L6U9 139 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 SPXQ9BT56 116 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 TLN1Q9Y490 2541 aaKnown RBP11.17□□□□□ -0.62
LIMS1-215ENST00000544547 Q6ZUT4 128 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 SMIM2Q9BVW6 85 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 E9PLD3 99 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 IGLV1-44P01699 117 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 WT1P19544 449 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-215ENST00000544547 HERV-K104P63124 156 aa11.17□□□□□ -0.62
LIMS1-215ENST00000544547 NCOR2Q9Y618 2525 aa11.16□□□□□ -0.62
LIMS1-215ENST00000544547 ZFP2Q6ZN57 461 aa11.16□□□□□ -0.62
LIMS1-215ENST00000544547 AGRNO00468 2067 aa11.16□□□□□ -0.62
LIMS1-215ENST00000544547 H3BMM0 161 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 C9orf153Q5TBE3 101 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 ANKRD29Q8N6D5 301 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 UBE2WQ96B02 151 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 GNLYP22749 145 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 FOXE3Q13461 319 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 MAPKAPK5-AS1Q8N8E1 139 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 EDA2RQ9HAV5 297 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 ADARB2-AS1A8MUL3 147 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 OOSP1A8MZH6 123 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 MINOS1Q5TGZ0 78 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 DYNAPQ8N1N2 210 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 MINOS1-NBL1R4GNA1 71 aa11.15□□□□□ -0.62
LIMS1-215ENST00000544547 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.14□□□□□ -0.63
LIMS1-215ENST00000544547 OVOL1O14753 267 aa11.14□□□□□ -0.63
LIMS1-215ENST00000544547 TCTEX1D4Q5JR98 221 aa11.14□□□□□ -0.63
LIMS1-215ENST00000544547 CFHR4Q92496 578 aa11.14□□□□□ -0.63
LIMS1-215ENST00000544547 RNF5Q99942 180 aa11.14□□□□□ -0.63
LIMS1-215ENST00000544547 ARHGAP32A7KAX9 2087 aa11.14□□□□□ -0.63
LIMS1-215ENST00000544547 HIVEP3Q5T1R4 2406 aa11.14□□□□□ -0.63
LIMS1-215ENST00000544547 CELSR3Q9NYQ7 3312 aa11.14□□□□□ -0.63
LIMS1-215ENST00000544547 CEP295Q9C0D2 2601 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 TRBV7-9A0A0J9YWB2 115 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 B4DSR2 109 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 TEX36Q5VZQ5 186 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 SPRY4Q9C004 299 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 HIVEP2P31629 2446 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms