RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 MPV17L2Q567V2 206 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 SELENOKQ9Y6D0 94 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 IGLV2-18A0A075B6J9 118 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 EDN2P20800 178 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 PSMB8P28062 276 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 WFDC3Q8IUB2 231 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 Q8N8P6 123 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 NRACQ8N912 160 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 DPF1Q92782 380 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 CSPG4Q6UVK1 2322 aa13.62□□□□□ -0.23
VIM-209ENST00000544301 K7EMT4 169 aa13.61□□□□□ -0.23
VIM-209ENST00000544301 FBN2P35556 2912 aa13.61□□□□□ -0.23
VIM-209ENST00000544301 TRAV26-2A0A0B4J265 109 aa13.61□□□□□ -0.23
VIM-209ENST00000544301 ANKRD39Q53RE8 183 aa13.61□□□□□ -0.23
VIM-209ENST00000544301 USP24Q9UPU5 2620 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 PRSS47A8MTI9 375 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 J3QLI3 93 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 NUDT3O95989 172 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 SRD5A1P18405 259 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 APRG1Q8IVJ8 170 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 MAPK1IP1LQ8NDC0 245 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 C18orf15Q96N68 181 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 TGFAP01135 160 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 COX6B1P14854 86 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 RNASE4P34096 147 aaKnown RBP13.6□□□□□ -0.23
VIM-209ENST00000544301 DEFB125Q8N687 156 aa13.6□□□□□ -0.23
VIM-209ENST00000544301 BVES-AS1Q5T3Y7 98 aa13.59□□□□□ -0.23
VIM-209ENST00000544301 C10orf99Q6UWK7 81 aa13.59□□□□□ -0.23
VIM-209ENST00000544301 Q6ZVH6 145 aa13.59□□□□□ -0.23
VIM-209ENST00000544301 OR1N2Q8NGR9 330 aa13.59□□□□□ -0.23
VIM-209ENST00000544301 ORAOV1Q8WV07 137 aa13.59□□□□□ -0.23
VIM-209ENST00000544301 ANKRD17O75179 2603 aaKnown RBP13.59□□□□□ -0.23
VIM-209ENST00000544301 TRBV7-9A0A0J9YWB2 115 aa13.58□□□□□ -0.23
VIM-209ENST00000544301 KIR3DS1Q14943 382 aa13.58□□□□□ -0.23
VIM-209ENST00000544301 ANXA2RQ3ZCQ2 193 aa13.58□□□□□ -0.23
VIM-209ENST00000544301 TMEM158Q8WZ71 300 aa13.58□□□□□ -0.23
VIM-209ENST00000544301 BBC3Q96PG8 261 aaPredicted RBP13.58□□□□□ -0.23
VIM-209ENST00000544301 COX11Q9Y6N1 276 aa13.58□□□□□ -0.23
VIM-209ENST00000544301 ZFYVE26Q68DK2 2539 aa13.58□□□□□ -0.24
VIM-209ENST00000544301 ZNF462Q96JM2 2506 aa13.58□□□□□ -0.24
VIM-209ENST00000544301 ASIPP42127 132 aa13.58□□□□□ -0.24
VIM-209ENST00000544301 ZNF124Q15973 351 aa13.58□□□□□ -0.24
VIM-209ENST00000544301 C2orf91Q6ZV80 131 aa13.58□□□□□ -0.24
VIM-209ENST00000544301 DKK2Q9UBU2 259 aa13.58□□□□□ -0.24
VIM-209ENST00000544301 SPRY2O43597 315 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 FGF6P10767 208 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 S100A4P26447 101 aaKnown RBP13.57□□□□□ -0.24
VIM-209ENST00000544301 C12orf54Q6X4T0 127 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 MRAP2Q96G30 205 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 ZANQ9Y493 2812 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 TMEM89A2RUT3 159 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 M0R381 172 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 DCANP1Q8TF63 244 aa13.57□□□□□ -0.24
VIM-209ENST00000544301 USP9YO00507 2555 aaPredicted RBP13.57□□□□□ -0.24
VIM-209ENST00000544301 UBR5O95071 2799 aaPredicted RBP13.56□□□□□ -0.24
VIM-209ENST00000544301 SRSF1Q07955 248 aaKnown RBP eCLIP13.56□□□□□ -0.24
VIM-209ENST00000544301 A1L4Q6 167 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 CD5LO43866 347 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 MED14OSP0DP75 135 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 ID1P41134 155 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 POLQO75417 2590 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 GNRH2O43555 120 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 LAGE3Q14657 143 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 ODF1Q14990 250 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 PHLDA3Q9Y5J5 127 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 CENPEQ02224 2701 aa13.55□□□□□ -0.24
VIM-209ENST00000544301 RNF223E7ERA6 249 aa13.54□□□□□ -0.24
VIM-209ENST00000544301 FAM208BQ5VWN6 2430 aa13.54□□□□□ -0.24
VIM-209ENST00000544301 SMIM17P0DL12 118 aa13.54□□□□□ -0.24
VIM-209ENST00000544301 TCTAP57738 103 aa13.54□□□□□ -0.24
VIM-209ENST00000544301 SAMD13Q5VXD3 122 aa13.54□□□□□ -0.24
VIM-209ENST00000544301 BOD1L2Q8IYS8 172 aa13.54□□□□□ -0.24
VIM-209ENST00000544301 ZMAT4Q9H898 229 aa13.54□□□□□ -0.24
VIM-209ENST00000544301 LRRK2Q5S007 2527 aa13.53□□□□□ -0.24
VIM-209ENST00000544301 KLLNB2CW77 178 aa13.53□□□□□ -0.24
VIM-209ENST00000544301 FSHBP01225 129 aa13.53□□□□□ -0.24
VIM-209ENST00000544301 PRSS1P07477 247 aa13.53□□□□□ -0.24
VIM-209ENST00000544301 RNASE3P12724 160 aaKnown RBP13.53□□□□□ -0.24
VIM-209ENST00000544301 DPH3P1Q9H4G8 78 aa13.53□□□□□ -0.24
VIM-209ENST00000544301 VPREB3Q9UKI3 123 aa13.53□□□□□ -0.24
VIM-209ENST00000544301 IGHV4-31P0DP07 118 aa13.52□□□□□ -0.24
VIM-209ENST00000544301 C14orf178Q8N769 122 aaPredicted RBP13.52□□□□□ -0.24
VIM-209ENST00000544301 ZNF843Q8N446 348 aa13.52□□□□□ -0.25
VIM-209ENST00000544301 Q6YL49 198 aa13.51□□□□□ -0.25
VIM-209ENST00000544301 RASL10AQ92737 203 aa13.51□□□□□ -0.25
VIM-209ENST00000544301 FOXC2Q99958 501 aa13.51□□□□□ -0.25
VIM-209ENST00000544301 SMIM2Q9BVW6 85 aa13.51□□□□□ -0.25
VIM-209ENST00000544301 TAX1BP3O14907 124 aa13.51□□□□□ -0.25
VIM-209ENST00000544301 ATP5LO75964 103 aa13.51□□□□□ -0.25
VIM-209ENST00000544301 KRTAP10-9P60411 292 aa13.51□□□□□ -0.25
VIM-209ENST00000544301 HHLA3Q9XRX5 114 aa13.5□□□□□ -0.25
VIM-209ENST00000544301 MYOZ3Q8TDC0 251 aa13.49□□□□□ -0.25
VIM-209ENST00000544301 WFDC12Q8WWY7 111 aa13.49□□□□□ -0.25
VIM-209ENST00000544301 ZNF702PQ9H963 129 aa13.49□□□□□ -0.25
VIM-209ENST00000544301 MXRA5Q9NR99 2828 aa13.49□□□□□ -0.25
VIM-209ENST00000544301 LGALS1P09382 135 aaKnown RBP13.49□□□□□ -0.25
VIM-209ENST00000544301 NMUP48645 174 aa13.49□□□□□ -0.25
VIM-209ENST00000544301 TMEM97Q5BJF2 176 aa13.49□□□□□ -0.25
VIM-209ENST00000544301 PCP2Q8IVA1 136 aa13.49□□□□□ -0.25
VIM-209ENST00000544301 CCL25O15444 150 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms