RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 LINC00173Q6ZV60 143 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 LCTP09848 1927 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 IGLL5B9A064 214 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 DEFB136Q30KP8 78 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 THADAQ6YHU6 1953 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 ETDCA0A1B0GVM5 59 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 NCR3O14931 201 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 SVIPQ8NHG7 77 aa12.16□□□□□ -0.46
CHD4-210ENST00000544040 ZNF491Q8N8L2 437 aa12.15□□□□□ -0.46
CHD4-210ENST00000544040 C1orf147Q96MC9 270 aaPredicted RBP12.15□□□□□ -0.46
CHD4-210ENST00000544040 ICOSQ9Y6W8 199 aa12.15□□□□□ -0.46
CHD4-210ENST00000544040 FAM236AA0A1B0GUQ0 79 aa12.15□□□□□ -0.46
CHD4-210ENST00000544040 FAM236BA0A1B0GV22 79 aa12.15□□□□□ -0.46
CHD4-210ENST00000544040 TET1Q8NFU7 2136 aa12.15□□□□□ -0.46
CHD4-210ENST00000544040 FUSP35637 526 aaKnown RBP eCLIP12.15□□□□□ -0.47
CHD4-210ENST00000544040 MRPL23Q16540 153 aaKnown RBP12.15□□□□□ -0.47
CHD4-210ENST00000544040 SPATA25Q9BR10 227 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 E9PQ18 207 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 AGPAT4-IT1Q9H0P7 198 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 IGHV3-30P01768 117 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 IGHV3-33P01772 117 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 IGHV3-30-3P0DP02 117 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 IGHV3-30-5P0DP03 117 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 DOCK10Q96BY6 2186 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 PSMB8P28062 276 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 C11orf52Q96A22 123 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 DOCK6Q96HP0 2047 aa12.14□□□□□ -0.47
CHD4-210ENST00000544040 RBAKDNA6NC62 111 aa12.13□□□□□ -0.47
CHD4-210ENST00000544040 FOXI2Q6ZQN5 318 aa12.13□□□□□ -0.47
CHD4-210ENST00000544040 DEFB125Q8N687 156 aa12.13□□□□□ -0.47
CHD4-210ENST00000544040 C8orf31Q8N9H6 132 aa12.13□□□□□ -0.47
CHD4-210ENST00000544040 ESM1Q9NQ30 184 aa12.13□□□□□ -0.47
CHD4-210ENST00000544040 NDUFC2O95298 119 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 A0A0B4J2C4 111 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 HIST2H2BCQ6DN03 193 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 SND1-IT1Q9HBX3 110 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 NUPR1O60356 82 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 TDRG1Q3Y452 100 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 SRSF2Q01130 221 aaKnown RBP12.12□□□□□ -0.47
CHD4-210ENST00000544040 CAMK2N2Q96S95 79 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 SPTA1P02549 2419 aa12.12□□□□□ -0.47
CHD4-210ENST00000544040 CRIPAKQ8N1N5 446 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 HEATR1Q9H583 2144 aaKnown RBP12.11□□□□□ -0.47
CHD4-210ENST00000544040 INTS1Q8N201 2190 aaKnown RBP12.11□□□□□ -0.47
CHD4-210ENST00000544040 VSIG2Q96IQ7 327 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 A4D1N5 150 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 ACYP1P07311 99 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 HERV-K104P63124 156 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 TIRAPP58753 221 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 PI4KAP42356 2102 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 HOXB4P17483 251 aaPredicted RBP12.11□□□□□ -0.47
CHD4-210ENST00000544040 PRR20EP86478 221 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 PRR20CP86479 221 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 PRR20DP86480 221 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 PRR20BP86481 221 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 PRR20AP86496 221 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 LINC00311Q8N616 119 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 ZNF524Q96C55 264 aa12.11□□□□□ -0.47
CHD4-210ENST00000544040 ANKRD39Q53RE8 183 aa12.1□□□□□ -0.47
CHD4-210ENST00000544040 ZNF503Q96F45 646 aa12.1□□□□□ -0.47
CHD4-210ENST00000544040 NPBQ8NG41 125 aa12.1□□□□□ -0.47
CHD4-210ENST00000544040 WFDC2Q14508 124 aa12.1□□□□□ -0.47
CHD4-210ENST00000544040 XIRP1Q702N8 1843 aaKnown RBP12.1□□□□□ -0.47
CHD4-210ENST00000544040 GYPEP15421 78 aa12.1□□□□□ -0.47
CHD4-210ENST00000544040 MSRB1Q9NZV6 116 aa12.1□□□□□ -0.47
CHD4-210ENST00000544040 TTTY13Q9BZ97 58 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 A0A0J9YXV3 536 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 MP68P56378 58 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 NREPQ16612 68 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 ZMAT4Q9H898 229 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 PROK2Q9HC23 129 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 SLURP1P55000 103 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 CLEC2BQ92478 149 aa12.09□□□□□ -0.47
CHD4-210ENST00000544040 IGHV4-59P01825 116 aa12.08□□□□□ -0.48
CHD4-210ENST00000544040 TMEM61Q8N0U2 210 aa12.08□□□□□ -0.48
CHD4-210ENST00000544040 K7EQD1 137 aa12.08□□□□□ -0.48
CHD4-210ENST00000544040 FXYD2P54710 66 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 RPL39P62891 51 aaKnown RBP12.07□□□□□ -0.48
CHD4-210ENST00000544040 KIR2DL5BA0A0G2JN68 375 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 KIR2DL5BA0A0G2JPC4 375 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 KIR2DL5AQ8N109 375 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 DOPEY2Q9Y3R5 2298 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 DEFB112Q30KQ8 113 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 C9orf47Q6ZRZ4 202 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 ATOX1O00244 68 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 SCN5AQ14524 2016 aa12.07□□□□□ -0.48
CHD4-210ENST00000544040 SPANXCQ9NY87 97 aa12.06□□□□□ -0.48
CHD4-210ENST00000544040 POLEQ07864 2286 aa12.06□□□□□ -0.48
CHD4-210ENST00000544040 CCL24O00175 119 aa12.06□□□□□ -0.48
CHD4-210ENST00000544040 COX7A2LO14548 114 aa12.06□□□□□ -0.48
CHD4-210ENST00000544040 BRK1Q8WUW1 75 aa12.06□□□□□ -0.48
CHD4-210ENST00000544040 RITA1Q96K30 269 aa12.06□□□□□ -0.48
CHD4-210ENST00000544040 OPRPNQ99935 248 aaPredicted RBP12.06□□□□□ -0.48
CHD4-210ENST00000544040 NDUFB1O75438 58 aa12.06□□□□□ -0.48
CHD4-210ENST00000544040 J3KT08 172 aa12.05□□□□□ -0.48
CHD4-210ENST00000544040 RSPO1Q2MKA7 263 aaPredicted RBP12.05□□□□□ -0.48
CHD4-210ENST00000544040 RNASE8Q8TDE3 154 aaKnown RBP12.05□□□□□ -0.48
CHD4-210ENST00000544040 RNF183Q96D59 192 aa12.05□□□□□ -0.48
CHD4-210ENST00000544040 ELANEP08246 267 aa12.05□□□□□ -0.48
CHD4-210ENST00000544040 LINC01620Q4KN68 170 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 290.3 ms