RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 C8orf49Q96NF6 230 aa8.8□□□□□ -1
VPS33A-207ENST00000542790 GNG13Q9P2W3 67 aa8.8□□□□□ -1
VPS33A-207ENST00000542790 TP53TG3Q9ULZ0 132 aa8.8□□□□□ -1
VPS33A-207ENST00000542790 ZFP30Q9Y2G7 519 aa8.8□□□□□ -1
VPS33A-207ENST00000542790 KLF12Q9Y4X4 402 aa8.8□□□□□ -1
VPS33A-207ENST00000542790 GCGP01275 180 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 S100A9P06702 114 aaKnown RBP8.79□□□□□ -1
VPS33A-207ENST00000542790 PFN1P07737 140 aaKnown RBP8.79□□□□□ -1
VPS33A-207ENST00000542790 HTN3P15516 51 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 TCL1AP56279 114 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 KRTAP19-1Q8IUB9 90 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 LINC00612Q8N6U2 182 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 KCNS1Q96KK3 526 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 TXNDC17Q9BRA2 123 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 NAGKQ9UJ70 344 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 DNAH7Q8WXX0 4024 aa8.79□□□□□ -1
VPS33A-207ENST00000542790 TRGV11A0A075B6L2 103 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 IGHV4-4A0A075B6R2 117 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 TRBV6-1A0A0K0K1D8 114 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 IFNA1P01562 189 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 ATP5G1P05496 136 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 AKR1C3P42330 323 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 ZNF80P51504 273 aaPredicted RBP8.78□□□□□ -1
VPS33A-207ENST00000542790 BLOC1S1P78537 153 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 ZNF415Q09FC8 603 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 TMEM183BQ1AE95 376 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 ALKAL2Q6UX46 152 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 Q86TA4 180 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 TMEM183AQ8IXX5 376 aa8.78□□□□□ -1
VPS33A-207ENST00000542790 GAGE12BA1L429 117 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 FABP5P3A8MUU1 101 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 SPINK4O60575 86 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 GAGE7O76087 117 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 GAGE12FP0CL80 117 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 GAGE12GP0CL81 117 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 GAGE12IP0CL82 117 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 LGALS9BQ3B8N2 356 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 Q6ZTI0 123 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 NDUFAF3Q9BU61 184 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 SDF2L1Q9HCN8 221 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 MDFICQ9P1T7 246 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 APLNQ9ULZ1 77 aa8.77□□□□□ -1.01
VPS33A-207ENST00000542790 TRGV2A0A075B6R0 118 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 TRGV1A0A0A0MS02 117 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 F5H768 121 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 GNRH2O43555 120 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 LTAP01374 205 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 TAGLN2P37802 199 aaKnown RBP8.76□□□□□ -1.01
VPS33A-207ENST00000542790 COX8CQ7Z4L0 72 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 C18orf15Q96N68 181 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 SPXQ9BT56 116 aa8.76□□□□□ -1.01
VPS33A-207ENST00000542790 MEF2BQ02080 365 aaPredicted RBP8.75□□□□□ -1.01
VPS33A-207ENST00000542790 LGALS9CQ6DKI2 356 aa8.75□□□□□ -1.01
VPS33A-207ENST00000542790 LINC00476Q8WZB0 136 aa8.75□□□□□ -1.01
VPS33A-207ENST00000542790 IGHV3-16A0A0C4DH30 117 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 PDE6DO43924 150 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 LY6G6CO95867 125 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 TYMSP04818 313 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 BCL2P10415 239 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 FAM162BQ5T6X4 162 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 TMEM88Q6PEY1 159 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 BAGE2Q86Y30 109 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 C11orf52Q96A22 123 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 ZC2HC1AQ96GY0 325 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 C11orf21Q9P2W6 132 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 VAX2Q9UIW0 290 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 CSMD3Q7Z407 3707 aa8.74□□□□□ -1.01
VPS33A-207ENST00000542790 STARD9Q9P2P6 4700 aa8.73□□□□□ -1.01
VPS33A-207ENST00000542790 RPL35P42766 123 aaKnown RBP8.73□□□□□ -1.01
VPS33A-207ENST00000542790 CRIP1P50238 77 aa8.73□□□□□ -1.01
VPS33A-207ENST00000542790 OR5I1Q13606 314 aa8.73□□□□□ -1.01
VPS33A-207ENST00000542790 RASL10AQ92737 203 aa8.73□□□□□ -1.01
VPS33A-207ENST00000542790 MRPL16Q9NX20 251 aaKnown RBP8.73□□□□□ -1.01
VPS33A-207ENST00000542790 IGKV3D-20A0A0C4DH25 116 aa8.72□□□□□ -1.01
VPS33A-207ENST00000542790 M0R2P5 195 aa8.72□□□□□ -1.01
VPS33A-207ENST00000542790 ORM1P02763 201 aa8.72□□□□□ -1.01
VPS33A-207ENST00000542790 ZNF674Q2M3X9 581 aa8.72□□□□□ -1.01
VPS33A-207ENST00000542790 C15orf53Q8NAA6 179 aa8.72□□□□□ -1.01
VPS33A-207ENST00000542790 LYPD6BQ8NI32 183 aa8.72□□□□□ -1.01
VPS33A-207ENST00000542790 KMT2CQ8NEZ4 4911 aaKnown RBP8.72□□□□□ -1.01
VPS33A-207ENST00000542790 B4DEV8 164 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 SH2D1AO60880 128 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 P0DMU3 169 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 FAM231AP0DMU4 169 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 FAM231CP0DMU5 169 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 HOXA5P20719 270 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 NHLRC2Q8NBF2 726 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 MLST8Q9BVC4 326 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 MED9Q9NWA0 146 aa8.71□□□□□ -1.02
VPS33A-207ENST00000542790 TRAV26-1A0A087WT03 109 aa8.7□□□□□ -1.02
VPS33A-207ENST00000542790 RBFOX3A6NFN3 312 aa8.7□□□□□ -1.02
VPS33A-207ENST00000542790 KRBOX1C9JBD0 128 aa8.7□□□□□ -1.02
VPS33A-207ENST00000542790 H3BS24 57 aa8.7□□□□□ -1.02
VPS33A-207ENST00000542790 S100A4P26447 101 aaKnown RBP8.7□□□□□ -1.02
VPS33A-207ENST00000542790 ASIPP42127 132 aa8.7□□□□□ -1.02
VPS33A-207ENST00000542790 TEX261Q6UWH6 196 aa8.7□□□□□ -1.02
VPS33A-207ENST00000542790 DERL1Q9BUN8 251 aa8.7□□□□□ -1.02
VPS33A-207ENST00000542790 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.7□□□□□ -1.02
VPS33A-207ENST00000542790 TENM2Q9NT68 2774 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 H3BNG1 76 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms