RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CRXO43186 299 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-215ENST00000541108 RPS10P46783 165 aaKnown RBP13.05□□□□□ -0.32
CLIP1-215ENST00000541108 TDRG1Q3Y452 100 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 KCNS1Q96KK3 526 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 TRRAPQ9Y4A5 3859 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 IGLC6P0CF74 106 aa13.04□□□□□ -0.32
CLIP1-215ENST00000541108 FAM159AQ6UWV7 190 aa13.04□□□□□ -0.32
CLIP1-215ENST00000541108 PGLYRP4Q96LB8 373 aa13.04□□□□□ -0.32
CLIP1-215ENST00000541108 C20orf144Q9BQM9 153 aa13.04□□□□□ -0.32
CLIP1-215ENST00000541108 F2Z2F3 143 aa13.03□□□□□ -0.32
CLIP1-215ENST00000541108 FER1L6-AS1Q8NA97 138 aa13.03□□□□□ -0.32
CLIP1-215ENST00000541108 SPINK4O60575 86 aa13.02□□□□□ -0.32
CLIP1-215ENST00000541108 ANXA2RQ3ZCQ2 193 aa13.02□□□□□ -0.32
CLIP1-215ENST00000541108 DNLZQ5SXM8 178 aa13.02□□□□□ -0.32
CLIP1-215ENST00000541108 A0A1B0GUT8 65 aa13.02□□□□□ -0.33
CLIP1-215ENST00000541108 CTRLP40313 264 aa13.02□□□□□ -0.33
CLIP1-215ENST00000541108 BORCS7Q96B45 105 aa13.02□□□□□ -0.33
CLIP1-215ENST00000541108 SSBP4Q9BWG4 385 aaPredicted RBP13.02□□□□□ -0.33
CLIP1-215ENST00000541108 GNB1LQ9BYB4 327 aa13.02□□□□□ -0.33
CLIP1-215ENST00000541108 ZMAT5Q9UDW3 170 aaKnown RBP13.02□□□□□ -0.33
CLIP1-215ENST00000541108 NAGKQ9UJ70 344 aa13.02□□□□□ -0.33
CLIP1-215ENST00000541108 A0A1B0GW15 77 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 GRIFINA4D1Z8 144 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 FXYD7P58549 80 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 MUC21Q5SSG8 566 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 MRPL54Q6P161 138 aaKnown RBP13.01□□□□□ -0.33
CLIP1-215ENST00000541108 WDR73Q6P4I2 378 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 MORN3Q6PF18 240 aaPredicted RBP13.01□□□□□ -0.33
CLIP1-215ENST00000541108 LYZL1Q6UWQ5 148 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 CNFNQ9BYD5 112 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 WFDC10AQ9H1F0 79 aa13.01□□□□□ -0.33
CLIP1-215ENST00000541108 A0A1B0GXF2 115 aa13□□□□□ -0.33
CLIP1-215ENST00000541108 OR5AL1P0C617 328 aa13□□□□□ -0.33
CLIP1-215ENST00000541108 DEFB125Q8N687 156 aa13□□□□□ -0.33
CLIP1-215ENST00000541108 MDFIQ99750 246 aa13□□□□□ -0.33
CLIP1-215ENST00000541108 IGHV1OR15-1A0A075B7D0 117 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 SNAI2O43623 268 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 INSP01308 110 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 MT-ND6P03923 174 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 MED14OSP0DP75 135 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 ASIPP42127 132 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 HBBP68871 147 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 RIGQ13278 110 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 LURAP1LQ8IV03 231 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 Q8N1Y9 231 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 TPPP3Q9BW30 176 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 C1QTNF4Q9BXJ3 329 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 OXLD1Q5BKU9 147 aa12.99□□□□□ -0.33
CLIP1-215ENST00000541108 C1orf196B1AJZ1 125 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 TRGC2P03986 189 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 S100A8P05109 93 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 ARMS2P0C7Q2 107 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 RBMY1A1P0DJD3 496 aaKnown RBP12.98□□□□□ -0.33
CLIP1-215ENST00000541108 RBMY1CP0DJD4 496 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 S100A4P26447 101 aaKnown RBP12.98□□□□□ -0.33
CLIP1-215ENST00000541108 EGFEM1PQ0D2K5 195 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 RBMY1FQ15415 496 aaKnown RBP12.98□□□□□ -0.33
CLIP1-215ENST00000541108 LINC00467Q9BRT7 94 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 TRAPPC1Q9Y5R8 145 aa12.98□□□□□ -0.33
CLIP1-215ENST00000541108 SNURFLB1AK76 121 aa12.97□□□□□ -0.33
CLIP1-215ENST00000541108 GNRH2O43555 120 aa12.97□□□□□ -0.33
CLIP1-215ENST00000541108 HLA-DQA1P01909 254 aa12.97□□□□□ -0.33
CLIP1-215ENST00000541108 FRMD6-AS1P0C7T7 363 aa12.97□□□□□ -0.33
CLIP1-215ENST00000541108 TMEM256Q8N2U0 113 aa12.97□□□□□ -0.33
CLIP1-215ENST00000541108 XCL2Q9UBD3 114 aa12.97□□□□□ -0.33
CLIP1-215ENST00000541108 IGHV4-4A0A075B6R2 117 aa12.96□□□□□ -0.33
CLIP1-215ENST00000541108 CAMPP49913 170 aa12.96□□□□□ -0.33
CLIP1-215ENST00000541108 TMEM136Q6ZRR5 245 aa12.96□□□□□ -0.33
CLIP1-215ENST00000541108 RNASE3P12724 160 aaKnown RBP12.96□□□□□ -0.34
CLIP1-215ENST00000541108 NTF3P20783 257 aa12.96□□□□□ -0.34
CLIP1-215ENST00000541108 CACNG7P62955 275 aa12.96□□□□□ -0.34
CLIP1-215ENST00000541108 SCRT2Q9NQ03 307 aa12.96□□□□□ -0.34
CLIP1-215ENST00000541108 TRGV11A0A075B6L2 103 aa12.95□□□□□ -0.34
CLIP1-215ENST00000541108 PHOX2AO14813 284 aa12.95□□□□□ -0.34
CLIP1-215ENST00000541108 GIG44P09565 113 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-215ENST00000541108 RPL35AP18077 110 aaKnown RBP12.95□□□□□ -0.34
CLIP1-215ENST00000541108 RAB4BP61018 213 aa12.95□□□□□ -0.34
CLIP1-215ENST00000541108 RAB5BP61020 215 aa12.95□□□□□ -0.34
CLIP1-215ENST00000541108 GATD1Q8NB37 220 aa12.95□□□□□ -0.34
CLIP1-215ENST00000541108 H3BVH4 76 aa12.94□□□□□ -0.34
CLIP1-215ENST00000541108 FABP9Q0Z7S8 132 aa12.94□□□□□ -0.34
CLIP1-215ENST00000541108 ZNF493Q6ZR52 646 aa12.94□□□□□ -0.34
CLIP1-215ENST00000541108 FRZBQ92765 325 aa12.94□□□□□ -0.34
CLIP1-215ENST00000541108 LINC01587Q99440 93 aa12.94□□□□□ -0.34
CLIP1-215ENST00000541108 CSTL1Q9H114 145 aa12.94□□□□□ -0.34
CLIP1-215ENST00000541108 IGHV3-16A0A0C4DH30 117 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 TWIST1Q15672 202 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 C1orf158Q8N1D5 194 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 MRPL18Q9H0U6 180 aaKnown RBP12.93□□□□□ -0.34
CLIP1-215ENST00000541108 TP53TG3Q9ULZ0 132 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 TMA7Q9Y2S6 64 aaKnown RBP12.93□□□□□ -0.34
CLIP1-215ENST00000541108 PHLDA3Q9Y5J5 127 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 CBY3A6NI87 242 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 CSNK1G2-AS1Q8NCQ2 148 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 OR10AG1Q8NH19 301 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 TMEM208Q9BTX3 173 aa12.93□□□□□ -0.34
CLIP1-215ENST00000541108 LOC102724200A0A096LPH7 203 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-215ENST00000541108 KIR2DL5BA0A0G2JN68 375 aa12.92□□□□□ -0.34
CLIP1-215ENST00000541108 KIR2DL5BA0A0G2JPC4 375 aa12.92□□□□□ -0.34
CLIP1-215ENST00000541108 SPANXN1Q5VSR9 72 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms