RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TRAV26-2A0A0B4J265 109 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 IGKV3D-20A0A0C4DH25 116 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 TMEM89A2RUT3 159 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 OR1N2Q8NGR9 330 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 YAE1D1Q9NRH1 226 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 LGALS1P09382 135 aaKnown RBP8.23□□□□□ -1.09
CLIP1-213ENST00000540338 CRIP2P52943 208 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-213ENST00000540338 MPV17L2Q567V2 206 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 IGHG4P01861 327 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 GATA1P15976 413 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-213ENST00000540338 U3KQE9 123 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 DMXL1Q9Y485 3027 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 DMDP11532 3685 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 LOC400499M0QZD8 3231 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 AVPP01185 164 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 DEFB1P60022 68 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 TCTEX1D4Q5JR98 221 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 STPG4Q8N801 248 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 DUX3Q96PT4 197 aa8.22□□□□□ -1.09
CLIP1-213ENST00000540338 TRGV11A0A075B6L2 103 aa8.21□□□□□ -1.09
CLIP1-213ENST00000540338 TRAV8-6A0A0B4J262 113 aa8.21□□□□□ -1.09
CLIP1-213ENST00000540338 LINC01545Q5VT33 79 aa8.21□□□□□ -1.09
CLIP1-213ENST00000540338 SCGB1D4Q6XE38 83 aa8.21□□□□□ -1.09
CLIP1-213ENST00000540338 GNRH2O43555 120 aa8.21□□□□□ -1.09
CLIP1-213ENST00000540338 SUMO2P61956 95 aaKnown RBP8.21□□□□□ -1.09
CLIP1-213ENST00000540338 DOPEY1Q5JWR5 2465 aa8.21□□□□□ -1.09
CLIP1-213ENST00000540338 NBEAQ8NFP9 2946 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 A0A1W2PRX2 142 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 GCSHP23434 173 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 HOXD3P31249 432 aaPredicted RBP8.21□□□□□ -1.1
CLIP1-213ENST00000540338 Q6ZS46 218 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 OR11H12B2RN74 326 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 H7C1H1 209 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 COX8CQ7Z4L0 72 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 ZNF843Q8N446 348 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 C11orf44Q8N8P7 122 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 KLHL30-AS1Q8NEE0 82 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 OR11H1Q8NG94 326 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 OR11H2Q8NH07 326 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 CYSLTR1Q9Y271 337 aa8.21□□□□□ -1.1
CLIP1-213ENST00000540338 SPINK13Q1W4C9 94 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 OR9G4Q8NGQ1 327 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 ZNF256Q9Y2P7 627 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-213ENST00000540338 LINC01619G3V211 115 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 C20orf173Q96LM9 149 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 CSTL1Q9H114 145 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 DEFB131AP59861 70 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 UBE2E2Q96LR5 201 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 SMIM2Q9BVW6 85 aa8.2□□□□□ -1.1
CLIP1-213ENST00000540338 DLEU1O43261 78 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 SPRY2O43597 315 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 CDKN1BP46527 198 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 GATD1Q8NB37 220 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 LINC01587Q99440 93 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 ZFYVE26Q68DK2 2539 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 IGHV3OR16-12A0A075B7B8 117 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 A0A087WWL8 130 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 IGLV1-40P01703 118 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 COX8AP10176 69 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 GTF2H5Q6ZYL4 71 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 URB1-AS1Q96HZ7 61 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 LINC01549A6NIU2 74 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 U3KQK5 164 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 TRAV12-2A0A075B6T6 113 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 VCYO14598 125 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 GTSCR1Q86UQ5 136 aa8.19□□□□□ -1.1
CLIP1-213ENST00000540338 ZNF418Q8TF45 676 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-213ENST00000540338 CHTOPQ9Y3Y2 248 aaKnown RBP8.19□□□□□ -1.1
CLIP1-213ENST00000540338 IGHV4-31P0DP07 118 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 ZC2HC1BQ5TFG8 222 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 Q8N976 141 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 C20orf78Q9BR46 151 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 USP9XQ93008 2570 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-213ENST00000540338 IGHV4OR15-8A0A075B7B6 117 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 IGHV1OR15-1A0A075B7D0 117 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 A0A087WW49 117 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 TRBV7-9A0A0J9YWB2 115 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 CRXO43186 299 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-213ENST00000540338 SRSF9Q13242 221 aaKnown RBP eCLIP8.18□□□□□ -1.1
CLIP1-213ENST00000540338 SPATA12Q7Z6I5 190 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 BRI3O95415 125 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 SEC11AP67812 179 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 DGAT2L7PQ6IED9 249 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 RAB37Q96AX2 223 aa8.18□□□□□ -1.1
CLIP1-213ENST00000540338 HSD52Q0P140 79 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 Q6YL49 198 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 LRRC75A-AS1Q8N1F1 130 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 ORAOV1Q8WV07 137 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 HIST1H4GQ99525 98 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 LRRK2Q5S007 2527 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 NOTCH3Q9UM47 2321 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 DKK2Q9UBU2 259 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 KLK9Q9UKQ9 250 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 TNFRSF18Q9Y5U5 241 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 ZNF462Q96JM2 2506 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 PLNP26678 52 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 PSMB8P28062 276 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 C11orf21Q9P2W6 132 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 PTPN13Q12923 2485 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 DMXL2Q8TDJ6 3036 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms