RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 K7EQM0 130 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 GCGP01275 180 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 TCTE3Q8IZS6 198 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 FAM213BQ8TBF2 198 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 TRGV11A0A075B6L2 103 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 IGHV3-16A0A0C4DH30 117 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 A0A1B0GV50 99 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 PEX7O00628 323 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 IFNA7P01567 189 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 LGALS9BQ3B8N2 356 aa10.48□□□□□ -0.73
UBE3B-212ENST00000540230 LGALSLQ3ZCW2 172 aaPredicted RBP10.48□□□□□ -0.73
UBE3B-212ENST00000540230 hCG_2014768A0A024R1R8 64 aa10.47□□□□□ -0.73
UBE3B-212ENST00000540230 PFDN1O60925 122 aa10.47□□□□□ -0.73
UBE3B-212ENST00000540230 LINC00588Q9Y4M8 146 aa10.47□□□□□ -0.73
UBE3B-212ENST00000540230 ARL2-SNX15V9GYD0 113 aa10.47□□□□□ -0.73
UBE3B-212ENST00000540230 UMAD1C9J7I0 102 aa10.46□□□□□ -0.74
UBE3B-212ENST00000540230 SFTA3P0C7M3 94 aa10.46□□□□□ -0.74
UBE3B-212ENST00000540230 SMUG1Q53HV7 270 aa10.46□□□□□ -0.74
UBE3B-212ENST00000540230 Q86TA4 180 aa10.46□□□□□ -0.74
UBE3B-212ENST00000540230 SFT2D1Q8WV19 159 aa10.46□□□□□ -0.74
UBE3B-212ENST00000540230 MBD3L1Q8WWY6 194 aa10.46□□□□□ -0.74
UBE3B-212ENST00000540230 PFN1P07737 140 aaKnown RBP10.45□□□□□ -0.74
UBE3B-212ENST00000540230 TPT1P13693 172 aaKnown RBP10.45□□□□□ -0.74
UBE3B-212ENST00000540230 FHL2Q14192 279 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 Q6ZR54 194 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 ZNRF2Q8NHG8 242 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 STOML3Q8TAV4 291 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 RASL10AQ92737 203 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 ZNF479Q96JC4 524 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 SPXQ9BT56 116 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 SDF2L1Q9HCN8 221 aa10.45□□□□□ -0.74
UBE3B-212ENST00000540230 A0A096LPF7 62 aa10.44□□□□□ -0.74
UBE3B-212ENST00000540230 H3BNG1 76 aa10.44□□□□□ -0.74
UBE3B-212ENST00000540230 PAGE4O60829 102 aa10.44□□□□□ -0.74
UBE3B-212ENST00000540230 ZFP69Q49AA0 526 aa10.44□□□□□ -0.74
UBE3B-212ENST00000540230 CST9LP1Q5W188 147 aa10.44□□□□□ -0.74
UBE3B-212ENST00000540230 HIST1H2BAQ96A08 127 aa10.44□□□□□ -0.74
UBE3B-212ENST00000540230 NKX6-2Q9C056 277 aaPredicted RBP10.44□□□□□ -0.74
UBE3B-212ENST00000540230 FBLL1A6NHQ2 334 aaKnown RBP10.43□□□□□ -0.74
UBE3B-212ENST00000540230 C1QBP02746 253 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 CCL18P55774 89 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 EIF5AP63241 154 aaKnown RBP10.43□□□□□ -0.74
UBE3B-212ENST00000540230 ESRGQ1W209 222 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 SAPCD1Q5SSQ6 148 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 KCNS1Q96KK3 526 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 PKHD1P08F94 4074 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 PKD1P98161 4303 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 IGKV3D-20A0A0C4DH25 116 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 M0R2P5 195 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 RTL8CO15255 209 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 CRIP1P50238 77 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 PPT1P50897 306 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 CRYBA4P53673 196 aa10.43□□□□□ -0.74
UBE3B-212ENST00000540230 PAX4O43316 350 aa10.42□□□□□ -0.74
UBE3B-212ENST00000540230 H2AFB1P0C5Y9 115 aa10.42□□□□□ -0.74
UBE3B-212ENST00000540230 FAM3BP58499 235 aaPredicted RBP10.42□□□□□ -0.74
UBE3B-212ENST00000540230 DPPA3Q6W0C5 159 aa10.42□□□□□ -0.74
UBE3B-212ENST00000540230 ZC2HC1AQ96GY0 325 aa10.42□□□□□ -0.74
UBE3B-212ENST00000540230 PRO0255Q9UI72 69 aa10.42□□□□□ -0.74
UBE3B-212ENST00000540230 RNASE3P12724 160 aaKnown RBP10.41□□□□□ -0.74
UBE3B-212ENST00000540230 CCL20P78556 96 aa10.41□□□□□ -0.74
UBE3B-212ENST00000540230 C9orf85Q96MD7 179 aa10.41□□□□□ -0.74
UBE3B-212ENST00000540230 HHLA3Q9XRX5 114 aa10.41□□□□□ -0.74
UBE3B-212ENST00000540230 DNAH11Q96DT5 4516 aa10.4□□□□□ -0.74
UBE3B-212ENST00000540230 TRAV4A0A0B4J268 109 aa10.4□□□□□ -0.74
UBE3B-212ENST00000540230 TRGV4A0A0C4DH28 118 aa10.4□□□□□ -0.74
UBE3B-212ENST00000540230 SCO2A0A1W2PP80 73 aa10.4□□□□□ -0.74
UBE3B-212ENST00000540230 AKAP14Q86UN6 197 aa10.4□□□□□ -0.74
UBE3B-212ENST00000540230 FMC1Q96HJ9 113 aa10.4□□□□□ -0.74
UBE3B-212ENST00000540230 DYNC1H1Q14204 4646 aaKnown RBP10.4□□□□□ -0.74
UBE3B-212ENST00000540230 A0A1B0GVG6 124 aa10.39□□□□□ -0.75
UBE3B-212ENST00000540230 C9JCJ5 164 aa10.39□□□□□ -0.75
UBE3B-212ENST00000540230 AKR1C3P42330 323 aa10.39□□□□□ -0.75
UBE3B-212ENST00000540230 UBE2G1P62253 170 aa10.39□□□□□ -0.75
UBE3B-212ENST00000540230 COX8CQ7Z4L0 72 aa10.39□□□□□ -0.75
UBE3B-212ENST00000540230 TRBV6-1A0A0K0K1D8 114 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 NBDYA0A0U1RRE5 68 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 PGPEP1LA6NFU8 196 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 FABP5P3A8MUU1 101 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 SH2D1AO60880 128 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 LTAP01374 205 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 SULT1A2P50226 295 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 ZNF876PQ49A33 203 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 C9orf62Q8N4C0 152 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 NHLRC2Q8NBF2 726 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 OR4C5Q8NGB2 326 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 TCEAL7Q9BRU2 100 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 KRTAP1-5Q9BYS1 174 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 ZFP30Q9Y2G7 519 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 ICOSQ9Y6W8 199 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 M0R036 132 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 SLAQ13239 276 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 ZNF506Q5JVG8 444 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 SLC51BQ86UW2 128 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 ZNF575Q86XF7 245 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 UPK3BQ9BT76 320 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 Q9H8V8 135 aa10.38□□□□□ -0.75
UBE3B-212ENST00000540230 MRPS16Q9Y3D3 137 aaKnown RBP10.38□□□□□ -0.75
UBE3B-212ENST00000540230 LOC100131303A0A0U1RQF7 123 aa10.37□□□□□ -0.75
UBE3B-212ENST00000540230 LINC00336Q6ZUF6 198 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms