RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 TOMM6Q96B49 74 aa13.53□□□□□ -0.24
RAB40C-205ENST00000539661 AGPAT4-IT1Q9H0P7 198 aa13.53□□□□□ -0.24
RAB40C-205ENST00000539661 UFC1Q9Y3C8 167 aa13.53□□□□□ -0.24
RAB40C-205ENST00000539661 BUB3O43684 328 aa13.52□□□□□ -0.24
RAB40C-205ENST00000539661 MED13LQ71F56 2210 aa13.52□□□□□ -0.24
RAB40C-205ENST00000539661 HRNRQ86YZ3 2850 aaPredicted RBP13.52□□□□□ -0.24
RAB40C-205ENST00000539661 TRAV26-2A0A0B4J265 109 aa13.52□□□□□ -0.25
RAB40C-205ENST00000539661 ODF3BA8MYP8 253 aa13.52□□□□□ -0.25
RAB40C-205ENST00000539661 LGALS1P09382 135 aaKnown RBP13.52□□□□□ -0.25
RAB40C-205ENST00000539661 NEXN-AS1Q8NBZ9 246 aa13.52□□□□□ -0.25
RAB40C-205ENST00000539661 CYSLTR1Q9Y271 337 aa13.52□□□□□ -0.25
RAB40C-205ENST00000539661 LYNX1G3V0Z9 82 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 LYNX1P0DP58 116 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 ATP5G2Q06055 141 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 SCGB2A2Q13296 93 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 TMEM78Q5T7P6 136 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 SPANXN1Q5VSR9 72 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 SCGB3A1Q96QR1 104 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 PGPEP1Q9NXJ5 209 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 RAXQ9Y2V3 346 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 NBL1P41271 181 aa13.51□□□□□ -0.25
RAB40C-205ENST00000539661 RNF182Q8N6D2 247 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 Q8N6K4 173 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 C20orf78Q9BR46 151 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 ZFAND3Q9H8U3 227 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 ITPR1Q14643 2758 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 M0R1W7 72 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 LYRM7Q5U5X0 104 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 C8orf86Q6ZUL3 223 aa13.5□□□□□ -0.25
RAB40C-205ENST00000539661 UBE2D1P51668 147 aa13.49□□□□□ -0.25
RAB40C-205ENST00000539661 ZNF418Q8TF45 676 aaPredicted RBP13.49□□□□□ -0.25
RAB40C-205ENST00000539661 VCX2Q9H322 139 aa13.49□□□□□ -0.25
RAB40C-205ENST00000539661 CSMD2Q7Z408 3487 aa13.49□□□□□ -0.25
RAB40C-205ENST00000539661 C9orf47Q6ZRZ4 202 aa13.49□□□□□ -0.25
RAB40C-205ENST00000539661 CLUHP3Q96NS8 147 aa13.49□□□□□ -0.25
RAB40C-205ENST00000539661 CDIP1Q9H305 208 aa13.49□□□□□ -0.25
RAB40C-205ENST00000539661 CD3EP07766 207 aa13.48□□□□□ -0.25
RAB40C-205ENST00000539661 KLK9Q2XQG4 91 aa13.48□□□□□ -0.25
RAB40C-205ENST00000539661 SYT8Q8NBV8 401 aa13.48□□□□□ -0.25
RAB40C-205ENST00000539661 KLK9Q9UKQ9 250 aa13.48□□□□□ -0.25
RAB40C-205ENST00000539661 OOSP1A8MZH6 123 aa13.48□□□□□ -0.25
RAB40C-205ENST00000539661 SMCPP49901 116 aaPredicted RBP13.48□□□□□ -0.25
RAB40C-205ENST00000539661 EBI3Q14213 229 aa13.48□□□□□ -0.25
RAB40C-205ENST00000539661 PRTN3P24158 256 aa13.47□□□□□ -0.25
RAB40C-205ENST00000539661 CRYBA4P53673 196 aa13.47□□□□□ -0.25
RAB40C-205ENST00000539661 SUMO2P61956 95 aaKnown RBP13.47□□□□□ -0.25
RAB40C-205ENST00000539661 CENPVL3A0A0U1RRI6 287 aa13.47□□□□□ -0.25
RAB40C-205ENST00000539661 PRADC1Q9BSG0 188 aa13.47□□□□□ -0.25
RAB40C-205ENST00000539661 GEMIN7Q9H840 131 aaKnown RBP13.47□□□□□ -0.25
RAB40C-205ENST00000539661 UBE2D3P61077 147 aa13.46□□□□□ -0.25
RAB40C-205ENST00000539661 UBE2D2P62837 147 aa13.46□□□□□ -0.25
RAB40C-205ENST00000539661 IGHV3OR16-8A0A075B7F1 116 aa13.46□□□□□ -0.25
RAB40C-205ENST00000539661 TRAV8-2A0A0B4J237 113 aa13.46□□□□□ -0.25
RAB40C-205ENST00000539661 LINC01549A6NIU2 74 aa13.46□□□□□ -0.25
RAB40C-205ENST00000539661 LENEPQ9Y5L5 61 aa13.46□□□□□ -0.25
RAB40C-205ENST00000539661 IGHV7-81A0A0B4J1V7 117 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 ZNF815PA8K554 130 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 FAM110DQ8TAY7 271 aaPredicted RBP13.45□□□□□ -0.26
RAB40C-205ENST00000539661 BAALCQ8WXS3 180 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 TSPAN13O95857 204 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 COX6B1P14854 86 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 Q8NA96 180 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 PPDPFLQ8WWR9 84 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 MSRB2Q9Y3D2 182 aa13.45□□□□□ -0.26
RAB40C-205ENST00000539661 CLPSL1A2RUU4 121 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 M0R381 172 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 SPINK8P0C7L1 97 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 NFE4Q86UQ8 179 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 TRAV26-1A0A087WT03 109 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 IGHV3-35A0A0C4DH35 117 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 H3BVH4 76 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 C15orf32Q32M92 178 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 SCGB1D4Q6XE38 83 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 RASL10AQ92737 203 aa13.44□□□□□ -0.26
RAB40C-205ENST00000539661 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.43□□□□□ -0.26
RAB40C-205ENST00000539661 PSMB2P49721 201 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 SRSF9Q13242 221 aaKnown RBP eCLIP13.43□□□□□ -0.26
RAB40C-205ENST00000539661 C2orf66Q6UXQ4 117 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 TEN1Q86WV5 123 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 KLK15Q9H2R5 256 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 DPH3P1Q9H4G8 78 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 TRBV20-1A0A075B6N2 111 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 PRSS29PA6NIE9 313 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 PPP1R17O96001 155 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 CLEC3BP05452 202 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 CD7P09564 240 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 MINOS1Q5TGZ0 78 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 Q6ZUT4 128 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 MINOS1-NBL1R4GNA1 71 aa13.43□□□□□ -0.26
RAB40C-205ENST00000539661 ANKHD1Q8IWZ3 2542 aaKnown RBP13.42□□□□□ -0.26
RAB40C-205ENST00000539661 PAPPA-AS1Q5QFB9 102 aa13.42□□□□□ -0.26
RAB40C-205ENST00000539661 VMO1Q7Z5L0 202 aa13.42□□□□□ -0.26
RAB40C-205ENST00000539661 LOC107984156A0A0G2JMH3 177 aa13.42□□□□□ -0.26
RAB40C-205ENST00000539661 SBSPONQ8IVN8 264 aa13.42□□□□□ -0.26
RAB40C-205ENST00000539661 ARL17AQ8IVW1 177 aa13.42□□□□□ -0.26
RAB40C-205ENST00000539661 VKORC1Q9BQB6 163 aa13.42□□□□□ -0.26
RAB40C-205ENST00000539661 C1orf122Q6ZSJ8 110 aa13.41□□□□□ -0.26
RAB40C-205ENST00000539661 METTL26Q96S19 204 aa13.41□□□□□ -0.26
RAB40C-205ENST00000539661 CRYBG3Q68DQ2 2970 aa13.41□□□□□ -0.26
RAB40C-205ENST00000539661 PLEKHB2Q96CS7 222 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms