RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PPT1P50897 306 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 KHDC3LQ587J8 217 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 ARL6IP6Q8N6S5 226 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 NHLRC2Q8NBF2 726 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 OR5AC2Q9NZP5 309 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 NAGKQ9UJ70 344 aa9.05□□□□□ -0.96
SS18-204ENST00000539244 TRAV8-6A0A0B4J262 113 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 FAM240BA0A1B0GVZ2 78 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 H0YIZ8 118 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 CIDEAO60543 219 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 TAS2R45P59539 299 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 SLC25A29Q8N8R3 303 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 KCNS1Q96KK3 526 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 OTORQ9NRC9 128 aa9.04□□□□□ -0.96
SS18-204ENST00000539244 FBLL1A6NHQ2 334 aaKnown RBP9.03□□□□□ -0.96
SS18-204ENST00000539244 J3QL48 77 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 LAGE3Q14657 143 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 LELP1Q5T871 98 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 Q6ZSA8 131 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 TVP23CQ96ET8 276 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 ATP5SQ99766 215 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 Q9HAA7 133 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 SDF2L1Q9HCN8 221 aa9.03□□□□□ -0.96
SS18-204ENST00000539244 TRBV6-4A0A1B0GX49 114 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 PGPA6NDG6 321 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 RHOHQ15669 191 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 LRRC37A5PQ49AS3 106 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 OR10J3Q5JRS4 329 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 FFAR4Q5NUL3 377 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 FAM74A1Q5RGS3 127 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 CMTM2Q8TAZ6 248 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 HYLS1Q96M11 299 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 PRADC1Q9BSG0 188 aa9.02□□□□□ -0.97
SS18-204ENST00000539244 KRTAP29-1A8MX34 341 aaPredicted RBP9.01□□□□□ -0.97
SS18-204ENST00000539244 RS1O15537 224 aa9.01□□□□□ -0.97
SS18-204ENST00000539244 SIX6O95475 246 aa9.01□□□□□ -0.97
SS18-204ENST00000539244 PLA2G1BP04054 148 aaKnown RBP9.01□□□□□ -0.97
SS18-204ENST00000539244 CYCSP99999 105 aaKnown RBP9.01□□□□□ -0.97
SS18-204ENST00000539244 CFAP126Q5VTH2 177 aa9.01□□□□□ -0.97
SS18-204ENST00000539244 GOLT1AQ6ZVE7 132 aa9.01□□□□□ -0.97
SS18-204ENST00000539244 ASB13Q8WXK3 278 aa9.01□□□□□ -0.97
SS18-204ENST00000539244 TM2D2Q9BX73 214 aa9.01□□□□□ -0.97
SS18-204ENST00000539244 TREM1Q9NP99 234 aa9.01□□□□□ -0.97
SS18-204ENST00000539244 TRAV8-1A0A0A6YYK1 113 aa9□□□□□ -0.97
SS18-204ENST00000539244 F6UZH7 168 aa9□□□□□ -0.97
SS18-204ENST00000539244 IGHV3-30P01768 117 aa9□□□□□ -0.97
SS18-204ENST00000539244 IGHV3-33P01772 117 aa9□□□□□ -0.97
SS18-204ENST00000539244 IGHV3-30-3P0DP02 117 aa9□□□□□ -0.97
SS18-204ENST00000539244 IGHV3-30-5P0DP03 117 aa9□□□□□ -0.97
SS18-204ENST00000539244 ASAH1Q13510 395 aa9□□□□□ -0.97
SS18-204ENST00000539244 ZNF876PQ49A33 203 aa9□□□□□ -0.97
SS18-204ENST00000539244 MZT2BQ6NZ67 158 aa9□□□□□ -0.97
SS18-204ENST00000539244 DPPA3Q6W0C5 159 aa9□□□□□ -0.97
SS18-204ENST00000539244 PQLC2Q6ZP29 291 aa9□□□□□ -0.97
SS18-204ENST00000539244 PTH2Q96A98 100 aa9□□□□□ -0.97
SS18-204ENST00000539244 GTSF1LQ9H1H1 148 aa9□□□□□ -0.97
SS18-204ENST00000539244 MBD2Q9UBB5 411 aa9□□□□□ -0.97
SS18-204ENST00000539244 HSPB11Q9Y547 144 aa9□□□□□ -0.97
SS18-204ENST00000539244 WFDC2Q14508 124 aa8.99□□□□□ -0.97
SS18-204ENST00000539244 PPP1R1CQ8WVI7 109 aa8.99□□□□□ -0.97
SS18-204ENST00000539244 C9orf85Q96MD7 179 aa8.99□□□□□ -0.97
SS18-204ENST00000539244 RPH3ALQ9UNE2 315 aa8.99□□□□□ -0.97
SS18-204ENST00000539244 EIF3GO75821 320 aaKnown RBP eCLIP8.98□□□□□ -0.97
SS18-204ENST00000539244 MGST1P10620 155 aaKnown RBP8.98□□□□□ -0.97
SS18-204ENST00000539244 LINC00299Q6ZSB3 139 aa8.98□□□□□ -0.97
SS18-204ENST00000539244 LINC00528Q8N1L1 170 aa8.98□□□□□ -0.97
SS18-204ENST00000539244 ATP6V0E2Q8NHE4 81 aa8.98□□□□□ -0.97
SS18-204ENST00000539244 SCGB1C1Q8TD33 95 aa8.98□□□□□ -0.97
SS18-204ENST00000539244 DEFB104AQ8WTQ1 72 aa8.98□□□□□ -0.97
SS18-204ENST00000539244 C11orf21Q9P2W6 132 aa8.98□□□□□ -0.97
SS18-204ENST00000539244 TRAV8-3A0A0A6YYJ7 113 aa8.97□□□□□ -0.97
SS18-204ENST00000539244 SERTM2A0A1B0GWG4 89 aa8.97□□□□□ -0.97
SS18-204ENST00000539244 LINC00694P0DN24 101 aa8.97□□□□□ -0.97
SS18-204ENST00000539244 H2BFSP57053 126 aa8.97□□□□□ -0.97
SS18-204ENST00000539244 ACOT6Q3I5F7 207 aaPredicted RBP8.97□□□□□ -0.97
SS18-204ENST00000539244 NDFIP1Q9BT67 221 aa8.97□□□□□ -0.97
SS18-204ENST00000539244 SH3BGRL3Q9H299 93 aa8.97□□□□□ -0.97
SS18-204ENST00000539244 NDUFA13Q9P0J0 144 aa8.97□□□□□ -0.97
SS18-204ENST00000539244 TAAR5O14804 337 aa8.96□□□□□ -0.98
SS18-204ENST00000539244 MPC2O95563 127 aa8.96□□□□□ -0.98
SS18-204ENST00000539244 ZNF80P51504 273 aaPredicted RBP8.96□□□□□ -0.98
SS18-204ENST00000539244 GNG5P63218 68 aa8.96□□□□□ -0.98
SS18-204ENST00000539244 ZNF506Q5JVG8 444 aa8.96□□□□□ -0.98
SS18-204ENST00000539244 Q8N3U1 123 aa8.96□□□□□ -0.98
SS18-204ENST00000539244 IGHV3-73A0A0B4J1V6 119 aa8.95□□□□□ -0.98
SS18-204ENST00000539244 A0A1W2PPV4 95 aa8.95□□□□□ -0.98
SS18-204ENST00000539244 PGPEP1LA6NFU8 196 aa8.95□□□□□ -0.98
SS18-204ENST00000539244 PET100P0DJ07 73 aa8.95□□□□□ -0.98
SS18-204ENST00000539244 RNASE3P12724 160 aaKnown RBP8.95□□□□□ -0.98
SS18-204ENST00000539244 RPL12P30050 165 aaKnown RBP8.95□□□□□ -0.98
SS18-204ENST00000539244 PIK3CD-AS1Q5SR53 167 aa8.95□□□□□ -0.98
SS18-204ENST00000539244 ENKURQ8TC29 256 aa8.95□□□□□ -0.98
SS18-204ENST00000539244 SMIM3Q9BZL3 60 aa8.95□□□□□ -0.98
SS18-204ENST00000539244 LRP1Q07954 4544 aaKnown RBP8.94□□□□□ -0.98
SS18-204ENST00000539244 GCGP01275 180 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 TCRAP04437 139 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 RAB2AP61019 212 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 TOR2AQ5JU69 321 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 ZFP2Q6ZN57 461 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 C5orf17Q8NAS9 161 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms