RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 ZNF688P0C7X2 276 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 VAMP3Q15836 100 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 Q6AWC8 147 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 FASNP49327 2511 aaKnown RBP6.66□□□□□ -1.34
UBE3B-208ENST00000538070 HIST2H2BCQ6DN03 193 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 MAP1LC3AQ9H492 121 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 C7orf71A4D174 169 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 B4DSR2 109 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 COX6B1P14854 86 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 PRR9Q5T870 116 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 C14orf178Q8N769 122 aaPredicted RBP6.66□□□□□ -1.34
UBE3B-208ENST00000538070 ZNF48Q96MX3 618 aaPredicted RBP6.66□□□□□ -1.34
UBE3B-208ENST00000538070 DUX3Q96PT4 197 aa6.66□□□□□ -1.34
UBE3B-208ENST00000538070 GNRH2O43555 120 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 RPS20P60866 119 aaKnown RBP6.65□□□□□ -1.34
UBE3B-208ENST00000538070 ZNF747Q9BV97 191 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 TTTY13Q9BZ97 58 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 PHLDA3Q9Y5J5 127 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 FBLL1A6NHQ2 334 aaKnown RBP6.65□□□□□ -1.34
UBE3B-208ENST00000538070 F5H697 171 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 TNFRSF6BO95407 300 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 RAB9AP51151 201 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 NEGR1Q7Z3B1 354 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 DKK2Q9UBU2 259 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 HECTD1Q9ULT8 2610 aa6.65□□□□□ -1.34
UBE3B-208ENST00000538070 KRTAP10-9P60411 292 aa6.65□□□□□ -1.35
UBE3B-208ENST00000538070 FAM74A4Q5TZK3 123 aa6.65□□□□□ -1.35
UBE3B-208ENST00000538070 BBC3Q96PG8 261 aaPredicted RBP6.65□□□□□ -1.35
UBE3B-208ENST00000538070 TRAV12-2A0A075B6T6 113 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 DEFB136Q30KP8 78 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 IFI27L1Q96BM0 104 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 FN1P02751 2386 aaKnown RBP6.64□□□□□ -1.35
UBE3B-208ENST00000538070 ITPR3Q14573 2671 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 HBDP02042 147 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 PTTG1IPP53801 180 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 SYNJ2BPP57105 145 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 TMEM158Q8WZ71 300 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 FOXC2Q99958 501 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 TMEM160Q9NX00 188 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 TRAV12-3A0A0B4J271 114 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 A0A1B0GW15 77 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 PSMG4Q5JS54 123 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 PET117Q6UWS5 81 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 RAB37Q96AX2 223 aa6.64□□□□□ -1.35
UBE3B-208ENST00000538070 TRBV6-1A0A0K0K1D8 114 aa6.63□□□□□ -1.35
UBE3B-208ENST00000538070 FAM223BA6NKX1 122 aa6.63□□□□□ -1.35
UBE3B-208ENST00000538070 ANXA2RQ3ZCQ2 193 aa6.63□□□□□ -1.35
UBE3B-208ENST00000538070 FAM223AQ8IWN6 122 aa6.63□□□□□ -1.35
UBE3B-208ENST00000538070 DLEU1O43261 78 aa6.63□□□□□ -1.35
UBE3B-208ENST00000538070 HELZ2Q9BYK8 2649 aaKnown RBP6.63□□□□□ -1.35
UBE3B-208ENST00000538070 A0A087WWL8 130 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 K7EMI3 77 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 IGLC6P0CF74 106 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 FCER1GP30273 86 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 A0A096LNJ9 63 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 A6NDX4 124 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 IGHG2P01859 326 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 GTSCR1Q86UQ5 136 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 LINC00477Q96M19 166 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 JPT2Q9H910 190 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 A0A0G2JLM5 398 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 C9orf139Q6ZV77 190 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 RPL39LQ96EH5 51 aaKnown RBP6.62□□□□□ -1.35
UBE3B-208ENST00000538070 RNF185Q96GF1 192 aa6.62□□□□□ -1.35
UBE3B-208ENST00000538070 PEF1Q9UBV8 284 aaKnown RBP6.62□□□□□ -1.35
UBE3B-208ENST00000538070 CD7P09564 240 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 PCP2Q8IVA1 136 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 OR2K2Q8NGT1 345 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 ST20Q9HBF5 79 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 DAZ1Q9NQZ3 744 aaKnown RBP6.61□□□□□ -1.35
UBE3B-208ENST00000538070 KLK9Q9UKQ9 250 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 NIPBLQ6KC79 2804 aaeCLIP6.61□□□□□ -1.35
UBE3B-208ENST00000538070 TRAV8-6A0A0B4J262 113 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 A0A1W2PRX2 142 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 NDUFA4O00483 81 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 EMP1P54849 157 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 ITPR2Q14571 2701 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 NDUFS8O00217 210 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 ASIPP42127 132 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 ZNF493Q6ZR52 646 aa6.61□□□□□ -1.35
UBE3B-208ENST00000538070 HOXA3O43365 443 aaPredicted RBP6.6□□□□□ -1.35
UBE3B-208ENST00000538070 LINC01559Q495D7 138 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 LINC01356Q8N9X3 169 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 MEGF9Q9H1U4 602 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 APCP25054 2843 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 IGHV7-4-1A0A0J9YVY3 117 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 SMIM17P0DL12 118 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 FAM159AQ6UWV7 190 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 GPHB5Q86YW7 130 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 USMG5Q96IX5 58 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 TRAV21A0A0B4J279 112 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 PRM2P04554 102 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 SPINK13Q1W4C9 94 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 LINC01545Q5VT33 79 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 C18orf65Q6ZTR6 163 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 MYOZ3Q8TDC0 251 aa6.6□□□□□ -1.35
UBE3B-208ENST00000538070 IGHV3-73A0A0B4J1V6 119 aa6.59□□□□□ -1.35
UBE3B-208ENST00000538070 ZNF575Q86XF7 245 aa6.59□□□□□ -1.35
UBE3B-208ENST00000538070 TMEM190Q8WZ59 177 aa6.59□□□□□ -1.35
UBE3B-208ENST00000538070 AP1S3Q96PC3 154 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms