RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 LGALS9BQ3B8N2 356 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 TMEM88Q6PEY1 159 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 TMEM183AQ8IXX5 376 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 C18orf15Q96N68 181 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 C11orf21Q9P2W6 132 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 NAGKQ9UJ70 344 aa13.97□□□□□ -0.17
CPSF1-209ENST00000532725 TRGV11A0A075B6L2 103 aa13.96□□□□□ -0.17
CPSF1-209ENST00000532725 TRGV1A0A0A0MS02 117 aa13.96□□□□□ -0.17
CPSF1-209ENST00000532725 PFN1P07737 140 aaKnown RBP13.96□□□□□ -0.17
CPSF1-209ENST00000532725 NKX2-5P52952 324 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-209ENST00000532725 ZNF415Q09FC8 603 aa13.96□□□□□ -0.17
CPSF1-209ENST00000532725 TRBV6-1A0A0K0K1D8 114 aa13.95□□□□□ -0.18
CPSF1-209ENST00000532725 COX8CQ7Z4L0 72 aa13.95□□□□□ -0.18
CPSF1-209ENST00000532725 Q86TA4 180 aa13.95□□□□□ -0.18
CPSF1-209ENST00000532725 FMC1Q96HJ9 113 aa13.95□□□□□ -0.18
CPSF1-209ENST00000532725 KCNS1Q96KK3 526 aa13.95□□□□□ -0.18
CPSF1-209ENST00000532725 ZFP30Q9Y2G7 519 aa13.95□□□□□ -0.18
CPSF1-209ENST00000532725 IGHV3-16A0A0C4DH30 117 aa13.94□□□□□ -0.18
CPSF1-209ENST00000532725 TYMSP04818 313 aa13.94□□□□□ -0.18
CPSF1-209ENST00000532725 SPXQ9BT56 116 aa13.94□□□□□ -0.18
CPSF1-209ENST00000532725 TRGV2A0A075B6R0 118 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 TEX46H3BTG2 121 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 HOXA5P20719 270 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 CRIP1P50238 77 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 SDF2L1Q9HCN8 221 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 MANBALQ9NQG1 85 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 GNG13Q9P2W3 67 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 BOLA1Q9Y3E2 137 aa13.93□□□□□ -0.18
CPSF1-209ENST00000532725 FABP5P3A8MUU1 101 aa13.92□□□□□ -0.18
CPSF1-209ENST00000532725 LTAP01374 205 aa13.92□□□□□ -0.18
CPSF1-209ENST00000532725 AKR1C3P42330 323 aa13.92□□□□□ -0.18
CPSF1-209ENST00000532725 UBE2G1P62253 170 aa13.92□□□□□ -0.18
CPSF1-209ENST00000532725 OR5I1Q13606 314 aa13.92□□□□□ -0.18
CPSF1-209ENST00000532725 RASL10AQ92737 203 aa13.92□□□□□ -0.18
CPSF1-209ENST00000532725 MRPL16Q9NX20 251 aaKnown RBP13.92□□□□□ -0.18
CPSF1-209ENST00000532725 KMT2AQ03164 3969 aa13.91□□□□□ -0.18
CPSF1-209ENST00000532725 SCO2A0A1W2PP80 73 aa13.91□□□□□ -0.18
CPSF1-209ENST00000532725 S100A9P06702 114 aaKnown RBP13.91□□□□□ -0.18
CPSF1-209ENST00000532725 C15orf53Q8NAA6 179 aa13.91□□□□□ -0.18
CPSF1-209ENST00000532725 ZC2HC1AQ96GY0 325 aa13.91□□□□□ -0.18
CPSF1-209ENST00000532725 P0DMU3 169 aa13.9□□□□□ -0.18
CPSF1-209ENST00000532725 FAM231AP0DMU4 169 aa13.9□□□□□ -0.18
CPSF1-209ENST00000532725 FAM231CP0DMU5 169 aa13.9□□□□□ -0.18
CPSF1-209ENST00000532725 ALKAL2Q6UX46 152 aa13.9□□□□□ -0.18
CPSF1-209ENST00000532725 MUC4Q99102 2169 aa13.9□□□□□ -0.18
CPSF1-209ENST00000532725 IGKV3D-20A0A0C4DH25 116 aa13.89□□□□□ -0.19
CPSF1-209ENST00000532725 TXNDC17Q9BRA2 123 aa13.89□□□□□ -0.19
CPSF1-209ENST00000532725 TRAV26-1A0A087WT03 109 aa13.88□□□□□ -0.19
CPSF1-209ENST00000532725 M0R2P5 195 aa13.88□□□□□ -0.19
CPSF1-209ENST00000532725 ZNF674Q2M3X9 581 aa13.88□□□□□ -0.19
CPSF1-209ENST00000532725 POM121L12Q8N7R1 296 aa13.88□□□□□ -0.19
CPSF1-209ENST00000532725 ZNF575Q86XF7 245 aa13.87□□□□□ -0.19
CPSF1-209ENST00000532725 C11orf52Q96A22 123 aa13.87□□□□□ -0.19
CPSF1-209ENST00000532725 MLST8Q9BVC4 326 aa13.87□□□□□ -0.19
CPSF1-209ENST00000532725 A0A0J9YY99 117 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 H3BNG1 76 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 SH2D1AO60880 128 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 NUDT3O95989 172 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 RNASE3P12724 160 aaKnown RBP13.86□□□□□ -0.19
CPSF1-209ENST00000532725 BLOC1S1P78537 153 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 FAM162BQ5T6X4 162 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 BAGE2Q86Y30 109 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 VSIG2Q96IQ7 327 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 C9orf85Q96MD7 179 aa13.86□□□□□ -0.19
CPSF1-209ENST00000532725 IGHV3-53P01767 116 aa13.85□□□□□ -0.19
CPSF1-209ENST00000532725 ORM1P02763 201 aa13.85□□□□□ -0.19
CPSF1-209ENST00000532725 FHL2Q14192 279 aa13.85□□□□□ -0.19
CPSF1-209ENST00000532725 LYPD6BQ8NI32 183 aa13.85□□□□□ -0.19
CPSF1-209ENST00000532725 KRBOX1C9JBD0 128 aa13.84□□□□□ -0.19
CPSF1-209ENST00000532725 IFNA1P01562 189 aa13.84□□□□□ -0.19
CPSF1-209ENST00000532725 BCL2P10415 239 aa13.84□□□□□ -0.19
CPSF1-209ENST00000532725 RPL35P42766 123 aaKnown RBP13.84□□□□□ -0.19
CPSF1-209ENST00000532725 MEF2BQ02080 365 aaPredicted RBP13.84□□□□□ -0.19
CPSF1-209ENST00000532725 RNF212Q495C1 297 aa13.84□□□□□ -0.19
CPSF1-209ENST00000532725 NHLRC2Q8NBF2 726 aa13.84□□□□□ -0.19
CPSF1-209ENST00000532725 DERL1Q9BUN8 251 aa13.84□□□□□ -0.19
CPSF1-209ENST00000532725 DNLZQ5SXM8 178 aa13.83□□□□□ -0.2
CPSF1-209ENST00000532725 PTH2Q96A98 100 aa13.83□□□□□ -0.2
CPSF1-209ENST00000532725 ZNF479Q96JC4 524 aa13.83□□□□□ -0.2
CPSF1-209ENST00000532725 VAX2Q9UIW0 290 aa13.83□□□□□ -0.2
CPSF1-209ENST00000532725 B4DEV8 164 aa13.82□□□□□ -0.2
CPSF1-209ENST00000532725 PDE6DO43924 150 aa13.82□□□□□ -0.2
CPSF1-209ENST00000532725 SFTA3P0C7M3 94 aa13.82□□□□□ -0.2
CPSF1-209ENST00000532725 TAGLN2P37802 199 aaKnown RBP13.82□□□□□ -0.2
CPSF1-209ENST00000532725 ZNF876PQ49A33 203 aa13.82□□□□□ -0.2
CPSF1-209ENST00000532725 HHLA3Q9XRX5 114 aa13.82□□□□□ -0.2
CPSF1-209ENST00000532725 TRAV4A0A0B4J268 109 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 PGPEP1LA6NFU8 196 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 C9JCJ5 164 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 M0R036 132 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 SLAQ13239 276 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 LINC01559Q495D7 138 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 PRO0255Q9UI72 69 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 DNAH6Q9C0G6 4158 aa13.81□□□□□ -0.2
CPSF1-209ENST00000532725 ASIPP42127 132 aa13.8□□□□□ -0.2
CPSF1-209ENST00000532725 CRYBA4P53673 196 aa13.8□□□□□ -0.2
CPSF1-209ENST00000532725 UBE2DNLQ8IWF7 75 aa13.8□□□□□ -0.2
CPSF1-209ENST00000532725 OR4C5Q8NGB2 326 aa13.8□□□□□ -0.2
CPSF1-209ENST00000532725 MED9Q9NWA0 146 aa13.8□□□□□ -0.2
CPSF1-209ENST00000532725 IL36BQ9NZH7 164 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms