RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SH2D6Q7Z4S9 175 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 NHLRC2Q8NBF2 726 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 OR10G9Q8NGN4 311 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 OR10G7Q8NGN6 311 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 KCNS1Q96KK3 526 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 MSRB1Q9NZV6 116 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 IGHV3-16A0A0C4DH30 117 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 F6UZH7 168 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 K7EQM0 130 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 HMGB3O15347 200 aaKnown RBP10.03□□□□□ -0.8
VPS28-215ENST00000531924 PPT1P50897 306 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 RAB2AP61019 212 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 WFDC10BQ8IUB3 73 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 ARL6IP6Q8N6S5 226 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 ASB13Q8WXK3 278 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 DNAH5Q8TE73 4624 aa10.03□□□□□ -0.8
VPS28-215ENST00000531924 CRYGDP07320 174 aa10.02□□□□□ -0.81
VPS28-215ENST00000531924 C10orf126Q8N4M7 172 aa10.02□□□□□ -0.81
VPS28-215ENST00000531924 WFDC1Q9HC57 220 aa10.02□□□□□ -0.81
VPS28-215ENST00000531924 A0A087WTM6 91 aa10.01□□□□□ -0.81
VPS28-215ENST00000531924 TRAV8-1A0A0A6YYK1 113 aa10.01□□□□□ -0.81
VPS28-215ENST00000531924 EPM2AB3EWF7 344 aa10.01□□□□□ -0.81
VPS28-215ENST00000531924 TYMSP04818 313 aa10.01□□□□□ -0.81
VPS28-215ENST00000531924 DNAH10OSP0CZ25 163 aa10.01□□□□□ -0.81
VPS28-215ENST00000531924 FUSP35637 526 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS28-215ENST00000531924 GNG5P63218 68 aa10.01□□□□□ -0.81
VPS28-215ENST00000531924 SERTM2A0A1B0GWG4 89 aa10□□□□□ -0.81
VPS28-215ENST00000531924 FBLL1A6NHQ2 334 aaKnown RBP10□□□□□ -0.81
VPS28-215ENST00000531924 PSCAO43653 123 aa10□□□□□ -0.81
VPS28-215ENST00000531924 ARL14EPLP0DKL9 152 aa10□□□□□ -0.81
VPS28-215ENST00000531924 CDC34P49427 236 aaPredicted RBP10□□□□□ -0.81
VPS28-215ENST00000531924 SGK494Q96LW2 274 aa10□□□□□ -0.81
VPS28-215ENST00000531924 TRAV8-6A0A0B4J262 113 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 LOC100131303A0A0U1RQF7 123 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 A6NHS1 94 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 TAAR5O14804 337 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 PFN1P07737 140 aaKnown RBP9.99□□□□□ -0.81
VPS28-215ENST00000531924 ZNF876PQ49A33 203 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 ZFP69Q49AA0 526 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 C5orf17Q8NAS9 161 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 HSD17B11Q8NBQ5 300 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 TVP23CQ96ET8 276 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 PRADC1Q9BSG0 188 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 BOLA1Q9Y3E2 137 aa9.99□□□□□ -0.81
VPS28-215ENST00000531924 IGHV3-38A0A0C4DH36 116 aa9.98□□□□□ -0.81
VPS28-215ENST00000531924 MBP02144 154 aa9.98□□□□□ -0.81
VPS28-215ENST00000531924 CIDEAO60543 219 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 GCGP01275 180 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 TCRAP04437 139 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 GATA1P15976 413 aaPredicted RBP9.97□□□□□ -0.81
VPS28-215ENST00000531924 GCHFRP30047 84 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 TIRAPP58753 221 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 OR10J3Q5JRS4 329 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 RAB24Q969Q5 203 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 TMEM167BQ9NRX6 74 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 PSG8Q9UQ74 426 aa9.97□□□□□ -0.81
VPS28-215ENST00000531924 IGHV3-73A0A0B4J1V6 119 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 CXorf1O96002 111 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 STAG3L2P0CL84 134 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 STAG3L3P0CL85 134 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 GCSHP23434 173 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 RHOHQ15669 191 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 SMUG1Q53HV7 270 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 PRNTQ86SH4 94 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 SLC25A29Q8N8R3 303 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 OR2G3Q8NGZ4 309 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 PSMG3Q9BT73 122 aaPredicted RBP9.96□□□□□ -0.82
VPS28-215ENST00000531924 ACTR3CQ9C0K3 210 aaPredicted RBP9.96□□□□□ -0.82
VPS28-215ENST00000531924 ALG5Q9Y673 324 aa9.96□□□□□ -0.82
VPS28-215ENST00000531924 SUMO1P63165 101 aaKnown RBP9.95□□□□□ -0.82
VPS28-215ENST00000531924 SERF2P84101 59 aa9.95□□□□□ -0.82
VPS28-215ENST00000531924 FLI1Q01543 452 aaPredicted RBP9.95□□□□□ -0.82
VPS28-215ENST00000531924 SAPCD1Q5SSQ6 148 aa9.95□□□□□ -0.82
VPS28-215ENST00000531924 CFAP126Q5VTH2 177 aa9.95□□□□□ -0.82
VPS28-215ENST00000531924 CYB561D1Q8N8Q1 229 aa9.95□□□□□ -0.82
VPS28-215ENST00000531924 FRZBQ92765 325 aa9.95□□□□□ -0.82
VPS28-215ENST00000531924 MED28Q9H204 178 aa9.95□□□□□ -0.82
VPS28-215ENST00000531924 TRBV6-4A0A1B0GX49 114 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 RS1O15537 224 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 S100A4P26447 101 aaKnown RBP9.94□□□□□ -0.82
VPS28-215ENST00000531924 ATP6V0CP27449 155 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 ZNF80P51504 273 aaPredicted RBP9.94□□□□□ -0.82
VPS28-215ENST00000531924 LINC01556Q5JQF7 62 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 INO80EQ8NBZ0 244 aaPredicted RBP9.94□□□□□ -0.82
VPS28-215ENST00000531924 AQP10Q96PS8 301 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 SH3BGRL3Q9H299 93 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 Q9HAA7 133 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 EPDR1Q9UM22 224 aa9.94□□□□□ -0.82
VPS28-215ENST00000531924 IGLV5-52A0A0A0MRZ9 124 aa9.93□□□□□ -0.82
VPS28-215ENST00000531924 IFNA7P01567 189 aa9.93□□□□□ -0.82
VPS28-215ENST00000531924 KRTAP10-1P60331 282 aa9.93□□□□□ -0.82
VPS28-215ENST00000531924 BORCS7-ASMTA0A0B4J1R7 106 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 IBA57-AS1B1ANH7 110 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 IGHV3-30P01768 117 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 IGHV3-33P01772 117 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 INAFM2P0DMQ5 153 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 IGHV3-30-3P0DP02 117 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 IGHV3-30-5P0DP03 117 aa9.92□□□□□ -0.82
VPS28-215ENST00000531924 MGST1P10620 155 aaKnown RBP9.92□□□□□ -0.82
VPS28-215ENST00000531924 XGP55808 180 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms