RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FOXI1Q12951 378 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 ERCC8Q13216 396 aa10.95□□□□□ -0.66
USP48-213ENST00000529637 TRBV7-3A0A075B6L6 115 aa10.94□□□□□ -0.66
USP48-213ENST00000529637 IGHV3-49A0A0A0MS15 119 aa10.94□□□□□ -0.66
USP48-213ENST00000529637 SCGB2A1O75556 95 aa10.94□□□□□ -0.66
USP48-213ENST00000529637 ZFP36P26651 326 aaKnown RBP10.94□□□□□ -0.66
USP48-213ENST00000529637 NXT2Q9NPJ8 142 aaKnown RBP10.94□□□□□ -0.66
USP48-213ENST00000529637 C8orf86Q6ZUL3 223 aa10.94□□□□□ -0.66
USP48-213ENST00000529637 SPINK8P0C7L1 97 aa10.94□□□□□ -0.66
USP48-213ENST00000529637 ODF3BA8MYP8 253 aa10.93□□□□□ -0.66
USP48-213ENST00000529637 ATP5LO75964 103 aa10.93□□□□□ -0.66
USP48-213ENST00000529637 MRPL16Q9NX20 251 aaKnown RBP10.93□□□□□ -0.66
USP48-213ENST00000529637 PGPEP1Q9NXJ5 209 aa10.93□□□□□ -0.66
USP48-213ENST00000529637 PRAC2D3DTV9 90 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 XGP55808 180 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 ZFP2Q6ZN57 461 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 MSRB2Q9Y3D2 182 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 Q6ZQT7 251 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 Q8N8P6 123 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 KLK15Q9H2R5 256 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 SMAD5-AS1Q9Y6J3 95 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 C15orf32Q32M92 178 aa10.92□□□□□ -0.66
USP48-213ENST00000529637 PDE6HQ13956 83 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 CFAP126Q5VTH2 177 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 ZNF418Q8TF45 676 aaPredicted RBP10.91□□□□□ -0.66
USP48-213ENST00000529637 A0A087WX48 190 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 IGHV7-81A0A0B4J1V7 117 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 F8W735 103 aaPredicted RBP10.91□□□□□ -0.66
USP48-213ENST00000529637 CTSGP08311 255 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 COX8CQ7Z4L0 72 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 MYOZ3Q8TDC0 251 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 C11orf21Q9P2W6 132 aa10.91□□□□□ -0.66
USP48-213ENST00000529637 IGHV3OR16-10A0A075B7F0 116 aa10.9□□□□□ -0.66
USP48-213ENST00000529637 CLEC3BP05452 202 aa10.9□□□□□ -0.66
USP48-213ENST00000529637 LY6DQ14210 128 aa10.9□□□□□ -0.66
USP48-213ENST00000529637 TAL2Q16559 108 aa10.9□□□□□ -0.66
USP48-213ENST00000529637 C1QTNF4Q9BXJ3 329 aa10.9□□□□□ -0.66
USP48-213ENST00000529637 CNFNQ9BYD5 112 aa10.9□□□□□ -0.66
USP48-213ENST00000529637 COL12A1Q99715 3063 aa10.9□□□□□ -0.67
USP48-213ENST00000529637 HOXA3O43365 443 aaPredicted RBP10.9□□□□□ -0.67
USP48-213ENST00000529637 UCNP55089 124 aa10.9□□□□□ -0.67
USP48-213ENST00000529637 PSMG4Q5JS54 123 aa10.9□□□□□ -0.67
USP48-213ENST00000529637 C11orf71Q6IPW1 123 aa10.9□□□□□ -0.67
USP48-213ENST00000529637 RNF183Q96D59 192 aa10.9□□□□□ -0.67
USP48-213ENST00000529637 IGKV3D-20A0A0C4DH25 116 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 A0A1W2PPR1 153 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 LINC01549A6NIU2 74 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 G3V318 75 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 HLA-DRB4P13762 266 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 PSMB2P49721 201 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 CLEC19AQ6UXS0 136 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 RNF182Q8N6D2 247 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 HLA-DRB4X5D2U9 266 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 LAGE3Q14657 143 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 Q6ZUT4 128 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 IL17RELQ6ZVW7 336 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 NRACQ8N912 160 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 CARD19Q96LW7 228 aa10.89□□□□□ -0.67
USP48-213ENST00000529637 LOC107984156A0A0G2JMH3 177 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 FABP5P3A8MUU1 101 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 ATP6V0E1O15342 81 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 SPRY2O43597 315 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 SAA4P35542 130 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 ARL17AQ8IVW1 177 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 LINC00527Q9UJ94 153 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 UFC1Q9Y3C8 167 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 MYMXA0A1B0GTQ4 84 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 PRSS29PA6NIE9 313 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 LGALS1P09382 135 aaKnown RBP10.88□□□□□ -0.67
USP48-213ENST00000529637 MINOS1Q5TGZ0 78 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 Q8N9W7 124 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 MINOS1-NBL1R4GNA1 71 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 TGFAP01135 160 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 ZFHX3Q15911 3703 aa10.88□□□□□ -0.67
USP48-213ENST00000529637 CSPG4Q6UVK1 2322 aa10.87□□□□□ -0.67
USP48-213ENST00000529637 TMEM219Q86XT9 240 aa10.87□□□□□ -0.67
USP48-213ENST00000529637 PLEKHB2Q96CS7 222 aa10.87□□□□□ -0.67
USP48-213ENST00000529637 ZNF48Q96MX3 618 aaPredicted RBP10.87□□□□□ -0.67
USP48-213ENST00000529637 BPESC1Q9GZL8 116 aa10.87□□□□□ -0.67
USP48-213ENST00000529637 OR11H12B2RN74 326 aa10.86□□□□□ -0.67
USP48-213ENST00000529637 OR11H1Q8NG94 326 aa10.86□□□□□ -0.67
USP48-213ENST00000529637 OR11H2Q8NH07 326 aa10.86□□□□□ -0.67
USP48-213ENST00000529637 OOSP1A8MZH6 123 aa10.86□□□□□ -0.67
USP48-213ENST00000529637 KIR2DL4Q99706 377 aa10.86□□□□□ -0.67
USP48-213ENST00000529637 TSPAN13O95857 204 aa10.85□□□□□ -0.67
USP48-213ENST00000529637 Q8N6K4 173 aa10.85□□□□□ -0.67
USP48-213ENST00000529637 KLHL30-AS1Q8NEE0 82 aa10.85□□□□□ -0.67
USP48-213ENST00000529637 DLX4Q92988 240 aaPredicted RBP10.85□□□□□ -0.67
USP48-213ENST00000529637 SS18L2Q9UHA2 77 aa10.85□□□□□ -0.67
USP48-213ENST00000529637 F8VRH5 84 aa10.85□□□□□ -0.67
USP48-213ENST00000529637 PLNP26678 52 aa10.85□□□□□ -0.67
USP48-213ENST00000529637 C1orf122Q6ZSJ8 110 aa10.85□□□□□ -0.67
USP48-213ENST00000529637 J3KRW8 73 aa10.84□□□□□ -0.67
USP48-213ENST00000529637 LINC01559Q495D7 138 aa10.84□□□□□ -0.67
USP48-213ENST00000529637 TMEM78Q5T7P6 136 aa10.84□□□□□ -0.67
USP48-213ENST00000529637 DEFB104AQ8WTQ1 72 aa10.84□□□□□ -0.67
USP48-213ENST00000529637 SIRPDQ9H106 197 aa10.84□□□□□ -0.67
USP48-213ENST00000529637 H7C1H1 209 aa10.84□□□□□ -0.67
USP48-213ENST00000529637 CREBBPQ92793 2442 aa10.84□□□□□ -0.67
USP48-213ENST00000529637 UBE2E1P51965 193 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms