RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PATE2Q6UY27 113 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 LINC00305Q7Z4B0 112 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 DAND5Q8N907 189 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 RPUSD1Q9UJJ7 312 aaKnown RBP4.47□□□□□ -1.69
CD44-225ENST00000527326 GOLGA4Q13439 2230 aaKnown RBP4.47□□□□□ -1.69
CD44-225ENST00000527326 CHD9Q3L8U1 2897 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 MYO7BQ6PIF6 2116 aa4.46□□□□□ -1.69
CD44-225ENST00000527326 C5orf42Q9H799 3197 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 EML6Q6ZMW3 1958 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 IGLV2-18A0A075B6J9 118 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 TRAV3A0A0B4J244 114 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 SMKR1H3BMG3 65 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 TMEM178BH3BS89 294 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 SS18L1O75177 396 aaPredicted RBP4.46□□□□□ -1.7
CD44-225ENST00000527326 IGHV3-13P01766 116 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 IGHV4-39P01824 125 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 GYPEP15421 78 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 ZNF134P52741 427 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 PCOLCEQ15113 449 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 ORMDL2Q53FV1 153 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 COX8CQ7Z4L0 72 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 LYPD1Q8N2G4 141 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 LINC00311Q8N616 119 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 NEXN-AS1Q8NBZ9 246 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 UBALD1Q8TB05 177 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 C10orf105Q8TEF2 133 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 RNF185Q96GF1 192 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 VKORC1Q9BQB6 163 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 SCNM1Q9BWG6 230 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 CNFNQ9BYD5 112 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 ZNF71Q9NQZ8 489 aaPredicted RBP4.46□□□□□ -1.7
CD44-225ENST00000527326 DCHS1Q96JQ0 3298 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 ALPK2Q86TB3 2170 aa4.46□□□□□ -1.7
CD44-225ENST00000527326 TANC2Q9HCD6 1990 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 CHD7Q9P2D1 2997 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 TRBV7-1A0A0A6YYK4 115 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 TRGV5A0A0B4J1U4 118 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 TRAV41A0A0B4J266 112 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 A0A1W2PRX2 142 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 EPOPA6NHQ4 379 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 C5orf67F2Z3F1 127 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 LST1O00453 97 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 ZNF22P17026 224 aaPredicted RBP4.45□□□□□ -1.7
CD44-225ENST00000527326 NBL1P41271 181 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 SSR4P51571 173 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 ERHP84090 104 aaKnown RBP4.45□□□□□ -1.7
CD44-225ENST00000527326 FAM201AQ5SY85 155 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 C1orf158Q8N1D5 194 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 ZCCHC24Q8N2G6 241 aaKnown RBP4.45□□□□□ -1.7
CD44-225ENST00000527326 SLC25A45Q8N413 288 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 SAP25Q8TEE9 199 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 PRR25Q96S07 402 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 KRTAP17-1Q9BYP8 105 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 EPG5Q9HCE0 2579 aa4.45□□□□□ -1.7
CD44-225ENST00000527326 DNAH14Q0VDD8 3507 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 PKD1L2Q7Z442 2459 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 A0A087WWL8 130 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 IGHV1-45A0A0A0MS14 117 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 TMEM223A0PJW6 202 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 KNCNA6PVL3 124 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 TRIAP1O43715 76 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 DEFB103AP81534 67 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 FAM27E3Q08E93 113 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 Q6JHZ5 121 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 FAM19A1Q7Z5A9 133 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 VKORC1L1Q8N0U8 176 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 MDS2Q8NDY4 140 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 TOMM6Q96B49 74 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 SCGB3A1Q96QR1 104 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 DEC1Q9P2X7 70 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 LAMTOR3Q9UHA4 124 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 ICOSQ9Y6W8 199 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 TECTAO75443 2155 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 TRANK1O15050 2925 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 AGRNO00468 2067 aa4.44□□□□□ -1.7
CD44-225ENST00000527326 ZFHX2Q9C0A1 2572 aaPredicted RBP4.43□□□□□ -1.7
CD44-225ENST00000527326 LRP4O75096 1905 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 IGKV1D-37A0A075B6S9 117 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.43□□□□□ -1.7
CD44-225ENST00000527326 C11orf86A6NJI1 115 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 SH2D1AO60880 128 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 INAFM2P0DMQ5 153 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 LGALS3P17931 250 aaKnown RBP4.43□□□□□ -1.7
CD44-225ENST00000527326 ATP5EP56381 51 aaPredicted RBP4.43□□□□□ -1.7
CD44-225ENST00000527326 FAM53AQ6NSI3 398 aaPredicted RBP4.43□□□□□ -1.7
CD44-225ENST00000527326 SEM1Q6ZVN7 128 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 IL17RELQ6ZVW7 336 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 FAM216BQ8N7L0 139 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 CCL4L1Q8NHW4 92 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 SMCR5Q8TEV8 140 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 DCANP1Q8TF63 244 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 CYSTM1Q9H1C7 97 aa4.43□□□□□ -1.7
CD44-225ENST00000527326 MYOFQ9NZM1 2061 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 KMT2BQ9UMN6 2715 aaPredicted RBP4.42□□□□□ -1.7
CD44-225ENST00000527326 A0A0J9YX75 114 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 SDHAF1A6NFY7 115 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 LILRA5A6NI73 299 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 WNT9BO14905 357 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 BUB3O43684 328 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 PROP1O75360 226 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms