RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 FAM167A-AS1Q96KT0 104 aa3.28□□□□□ -1.88
USP48-211ENST00000526044 PAXXQ9BUH6 204 aa3.28□□□□□ -1.88
USP48-211ENST00000526044 SLC25A2Q9BXI2 301 aa3.28□□□□□ -1.88
USP48-211ENST00000526044 TMEM14CQ9P0S9 112 aa3.28□□□□□ -1.88
USP48-211ENST00000526044 SMAD5-AS1Q9Y6J3 95 aa3.28□□□□□ -1.88
USP48-211ENST00000526044 V9GYY9 64 aa3.28□□□□□ -1.88
USP48-211ENST00000526044 A0A1B0GV50 99 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 MAP1LC3B2A6NCE7 125 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 H3BQ15 152 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 MRPS12O15235 138 aaKnown RBP3.27□□□□□ -1.89
USP48-211ENST00000526044 HSBP1O75506 76 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 HBE1P02100 147 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 SNRPCP09234 159 aaKnown RBP3.27□□□□□ -1.89
USP48-211ENST00000526044 ARL14EPLP0DKL9 152 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 IGLC2P0DOY2 106 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 PYYP10082 97 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 GCHFRP30047 84 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 TFPI2P48307 235 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 MEOX2P50222 304 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 FGF8P55075 233 aaPredicted RBP3.27□□□□□ -1.89
USP48-211ENST00000526044 RANP62826 216 aaKnown RBP3.27□□□□□ -1.89
USP48-211ENST00000526044 PSG9Q00887 426 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 ZNF726P1Q15940 193 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 GUCA2BQ16661 112 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 SAMD13Q5VXD3 122 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 LCN12Q6JVE5 192 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 ZNF767PQ75MW2 155 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 APRG1Q8IVJ8 170 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 TMEM61Q8N0U2 210 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 BLNKQ8WV28 456 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 PACRGQ96M98 296 aaPredicted RBP3.27□□□□□ -1.89
USP48-211ENST00000526044 LINC00052Q96N35 136 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 MAP1LC3BQ9GZQ8 125 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 MS4A6AQ9H2W1 248 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 TMEM167BQ9NRX6 74 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 ZNF586Q9NXT0 402 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 JMJD1CQ15652 2540 aa3.27□□□□□ -1.89
USP48-211ENST00000526044 TRBV19A0A075B6N1 114 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 TRAV2A0A0B4J234 112 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 TRAV1-1A0A0B4J248 108 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 IZUMO1RA6ND01 250 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 PGPA6NDG6 321 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 OR4C46A6NHA9 309 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 EPM2AB3EWF7 344 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 K7EQG2 157 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 ZNF253O75346 499 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 OXTP01178 125 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 OR10J4P0C629 311 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 GATA1P15976 413 aaPredicted RBP3.26□□□□□ -1.89
USP48-211ENST00000526044 PSMB3P49720 205 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 CEBPGP53567 150 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 DSCR10P59022 87 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 SNRPD3P62318 126 aaKnown RBP3.26□□□□□ -1.89
USP48-211ENST00000526044 UBE2L3P68036 154 aaKnown RBP3.26□□□□□ -1.89
USP48-211ENST00000526044 CCL20P78556 96 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 IFITM2Q01629 132 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 SSX7Q7RTT5 188 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 LYPD1Q8N2G4 141 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 Q8NBF4 154 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 LYPD6BQ8NI32 183 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 FXYD5Q96DB9 178 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 C2orf48Q96LS8 159 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 SLC50A1Q9BRV3 221 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 WNK1Q9H4A3 2382 aa3.26□□□□□ -1.89
USP48-211ENST00000526044 SETD2Q9BYW2 2564 aaPredicted RBP3.26□□□□□ -1.89
USP48-211ENST00000526044 TRAV8-2A0A0B4J237 113 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 A0A1W2PRE2 83 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 ISLRO14498 428 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 PPP1R2P9O14990 202 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 IFNA1P01562 189 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 CSN1S1P47710 185 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 SRSF9Q13242 221 aaKnown RBP eCLIP3.25□□□□□ -1.89
USP48-211ENST00000526044 PDE6HQ13956 83 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 CLLU1Q5K131 121 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 ZFP82Q8N141 532 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 EXOC3-AS1Q8N2X6 119 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 CMTM2Q8TAZ6 248 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 MRAPQ8TCY5 172 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 RXFP4Q8TDU9 374 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 DCANP1Q8TF63 244 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 PCNPQ8WW12 178 aaKnown RBP3.25□□□□□ -1.89
USP48-211ENST00000526044 FAM218AQ96MZ4 157 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 OVOL2Q9BRP0 275 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 NIPSNAP3BQ9BS92 247 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 NKX6-2Q9C056 277 aaPredicted RBP3.25□□□□□ -1.89
USP48-211ENST00000526044 Q9H3A6 140 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 ZNF331Q9NQX6 463 aaPredicted RBP3.25□□□□□ -1.89
USP48-211ENST00000526044 GNG13Q9P2W3 67 aa3.25□□□□□ -1.89
USP48-211ENST00000526044 ZNF256Q9Y2P7 627 aaPredicted RBP3.25□□□□□ -1.89
USP48-211ENST00000526044 FAM231BA6NCW3 169 aa3.24□□□□□ -1.89
USP48-211ENST00000526044 RBFOX3A6NFN3 312 aa3.24□□□□□ -1.89
USP48-211ENST00000526044 ZNF705FA8MVS1 300 aaPredicted RBP3.24□□□□□ -1.89
USP48-211ENST00000526044 OR11H12B2RN74 326 aa3.24□□□□□ -1.89
USP48-211ENST00000526044 F6UZH7 168 aa3.24□□□□□ -1.89
USP48-211ENST00000526044 SLC17A3O00476 420 aa3.24□□□□□ -1.89
USP48-211ENST00000526044 SLC25A5P05141 298 aaKnown RBP3.24□□□□□ -1.89
USP48-211ENST00000526044 NMBP08949 121 aa3.24□□□□□ -1.89
USP48-211ENST00000526044 CD7P09564 240 aa3.24□□□□□ -1.89
USP48-211ENST00000526044 ZNF688P0C7X2 276 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms