RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 PHRF1Q9P1Y6 1649 aaKnown RBP3.07□□□□□ -1.92
USP47-204ENST00000525078 LMO7Q8WWI1 1683 aa3.07□□□□□ -1.92
USP47-204ENST00000525078 IBA57-AS1B1ANH7 110 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 B4DSR2 109 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 ASAH2BP0C7U1 165 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 GNG4P50150 75 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 LAMA4Q16363 1823 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 FOCADQ5VW36 1801 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 Q6ZTI0 123 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 OTOSQ8NHW6 89 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 CYYR1Q96J86 154 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 CST9LQ9H4G1 147 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 CCL26Q9Y258 94 aa3.06□□□□□ -1.92
USP47-204ENST00000525078 SEC16AO15027 2179 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 ALKQ9UM73 1620 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 NFAT5O94916 1531 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 AGLP35573 1532 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 LOC107984156A0A0G2JMH3 177 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 ZNF705FA8MVS1 300 aaPredicted RBP3.05□□□□□ -1.92
USP47-204ENST00000525078 CCL4P13236 92 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 MIFP14174 115 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 PPP3R1P63098 170 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 PRR9Q5T870 116 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 ARL17AQ8IVW1 177 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 LINC00167Q96N53 147 aa3.05□□□□□ -1.92
USP47-204ENST00000525078 ADAMTS7Q9UKP4 1686 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 DIP2CQ9Y2E4 1556 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 BCL9LQ86UU0 1499 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 ARHGAP32A7KAX9 2087 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 ZFC3H1O60293 1989 aaKnown RBP3.04□□□□□ -1.92
USP47-204ENST00000525078 IGLV10-54A0A075B6I4 117 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 SPAARA0A1B0GVQ0 90 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 ZNF736B4DX44 427 aaPredicted RBP3.04□□□□□ -1.92
USP47-204ENST00000525078 H3BQF6 201 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 COPS9Q8WXC6 57 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 DPH3Q96FX2 82 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 BOKQ9UMX3 212 aaPredicted RBP3.04□□□□□ -1.92
USP47-204ENST00000525078 MYO16Q9Y6X6 1858 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 C4AP0C0L4 1744 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 C4BP0C0L5 1744 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 PEAK1Q9H792 1746 aa3.04□□□□□ -1.92
USP47-204ENST00000525078 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.04□□□□□ -1.92
USP47-204ENST00000525078 TP53BP1Q12888 1972 aaPredicted RBP3.03□□□□□ -1.92
USP47-204ENST00000525078 SIPA1L3O60292 1781 aaPredicted RBP3.03□□□□□ -1.92
USP47-204ENST00000525078 IGHV1-24A0A0C4DH33 117 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 C3orf85A0A1B0GTC6 90 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 C5orf67F2Z3F1 127 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 IGKV3-11P04433 115 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 DSCR4P56555 118 aaPredicted RBP3.03□□□□□ -1.92
USP47-204ENST00000525078 SNRNP25Q9BV90 132 aaKnown RBP3.03□□□□□ -1.92
USP47-204ENST00000525078 PRO2289Q9P1D8 64 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 MPC1Q9Y5U8 109 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 LHFPL6Q9Y693 200 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 NRXN3Q9Y4C0 1643 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 TANC2Q9HCD6 1990 aa3.03□□□□□ -1.92
USP47-204ENST00000525078 RICTORQ6R327 1708 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 RREB1Q92766 1687 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 IGKV2-24A0A0C4DH68 120 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 TPPP2P59282 170 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 KRTAP13-2Q52LG2 175 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 LINC01545Q5VT33 79 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 Q6ZUT4 128 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 GTF2H5Q6ZYL4 71 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 ARPINQ7Z6K5 226 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 CLECL1Q8IZS7 167 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 Q96M85 177 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 SMIM7Q9BQ49 75 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 NWD1Q149M9 1564 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 SLIT2O94813 1529 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 C1orf167Q5SNV9 1468 aa3.02□□□□□ -1.93
USP47-204ENST00000525078 MARF1Q9Y4F3 1742 aaKnown RBP3.02□□□□□ -1.93
USP47-204ENST00000525078 PTPRBP23467 1997 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 KIF1AQ12756 1690 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 MYH13Q9UKX3 1938 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 TRAV12-2A0A075B6T6 113 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 TCRBV4S1A1TA0A5B7 111 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 E7EQL1 145 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 E7EUB6 86 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 CCDC179H3BU77 68 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 EDF1O60869 148 aaKnown RBP3.01□□□□□ -1.93
USP47-204ENST00000525078 IGFBP7Q16270 282 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 DEFB113Q30KQ7 82 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 ASB16-AS1Q495Z4 193 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 SNX29P2Q8IUI4 249 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 SFT2D1Q8WV19 159 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 LAMB4A4D0S4 1761 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 TJP1Q07157 1748 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 TIAM2Q8IVF5 1701 aa3.01□□□□□ -1.93
USP47-204ENST00000525078 GPR179Q6PRD1 2367 aa3□□□□□ -1.93
USP47-204ENST00000525078 IGKV3D-11A0A0A0MRZ8 115 aa3□□□□□ -1.93
USP47-204ENST00000525078 TRAV10A0A0B4J240 114 aa3□□□□□ -1.93
USP47-204ENST00000525078 A0A1W2PNN7 141 aa3□□□□□ -1.93
USP47-204ENST00000525078 M0R2P5 195 aa3□□□□□ -1.93
USP47-204ENST00000525078 HYPMO75409 117 aa3□□□□□ -1.93
USP47-204ENST00000525078 ERC2-IT1O76042 136 aa3□□□□□ -1.93
USP47-204ENST00000525078 CD2P06729 351 aa3□□□□□ -1.93
USP47-204ENST00000525078 HIST1H1DP16402 221 aaKnown RBP3□□□□□ -1.93
USP47-204ENST00000525078 KRTAP5-9P26371 169 aa3□□□□□ -1.93
USP47-204ENST00000525078 GNG11P61952 73 aa3□□□□□ -1.93
USP47-204ENST00000525078 BTG2P78543 158 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms