RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 ZNRF2Q8NHG8 242 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 TCEAL7Q9BRU2 100 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 ZNF471Q9BX82 626 aaPredicted RBP11.35□□□□□ -0.59
LSM1-205ENST00000523511 MAP1LC3BQ9GZQ8 125 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 Q9H8V8 135 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 ICOSQ9Y6W8 199 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 PRSS29PA6NIE9 313 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 GNRH2O43555 120 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 CIDEAO60543 219 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 IGHV3-53P01767 116 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 PFN1P07737 140 aaKnown RBP11.34□□□□□ -0.59
LSM1-205ENST00000523511 UBE2G2P60604 165 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 ZNF726P1Q15940 193 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 MRPL23Q16540 153 aaKnown RBP11.34□□□□□ -0.59
LSM1-205ENST00000523511 TTC32Q5I0X7 151 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 OR4C5Q8NGB2 326 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 TVP23CQ96ET8 276 aa11.34□□□□□ -0.59
LSM1-205ENST00000523511 NBDYA0A0U1RRE5 68 aa11.33□□□□□ -0.6
LSM1-205ENST00000523511 FAM74A7A6NL05 159 aa11.33□□□□□ -0.6
LSM1-205ENST00000523511 FGF8P55075 233 aaPredicted RBP11.33□□□□□ -0.6
LSM1-205ENST00000523511 EIF5AL1Q6IS14 154 aaKnown RBP11.33□□□□□ -0.6
LSM1-205ENST00000523511 DPPA3Q6W0C5 159 aa11.33□□□□□ -0.6
LSM1-205ENST00000523511 PCNPQ8WW12 178 aaKnown RBP11.33□□□□□ -0.6
LSM1-205ENST00000523511 IGHV3-16A0A0C4DH30 117 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 FABP5P3A8MUU1 101 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 PEX7O00628 323 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 BCL2L11O43521 198 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 ORM1P02763 201 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 FHITP49789 147 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 CRYBA4P53673 196 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 UBE2G1P62253 170 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 ESRGQ1W209 222 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 CST9LP1Q5W188 147 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 SFT2D1Q8WV19 159 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 VSIG2Q96IQ7 327 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 UPK3BQ9BT76 320 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 ZFP30Q9Y2G7 519 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 ARL2-SNX15V9GYD0 113 aa11.32□□□□□ -0.6
LSM1-205ENST00000523511 VPS13DQ5THJ4 4388 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 A0A096LPF7 62 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 TRAV4A0A0B4J268 109 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 IGLV2-11P01706 119 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 TYMSP04818 313 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 TPT1P13693 172 aaKnown RBP11.31□□□□□ -0.6
LSM1-205ENST00000523511 FHL2Q14192 279 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 LGALSLQ3ZCW2 172 aaPredicted RBP11.31□□□□□ -0.6
LSM1-205ENST00000523511 FMC1Q96HJ9 113 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 C8orf49Q96NF6 230 aa11.31□□□□□ -0.6
LSM1-205ENST00000523511 MRPS16Q9Y3D3 137 aaKnown RBP11.31□□□□□ -0.6
LSM1-205ENST00000523511 A0A1W2PPQ1 181 aa11.3□□□□□ -0.6
LSM1-205ENST00000523511 TEX46H3BTG2 121 aa11.3□□□□□ -0.6
LSM1-205ENST00000523511 S100A9P06702 114 aaKnown RBP11.3□□□□□ -0.6
LSM1-205ENST00000523511 S100A4P26447 101 aaKnown RBP11.3□□□□□ -0.6
LSM1-205ENST00000523511 ZNF876PQ49A33 203 aa11.3□□□□□ -0.6
LSM1-205ENST00000523511 NEGR1Q7Z3B1 354 aa11.3□□□□□ -0.6
LSM1-205ENST00000523511 SH2D6Q7Z4S9 175 aa11.3□□□□□ -0.6
LSM1-205ENST00000523511 OR11H4Q8NGC9 324 aa11.3□□□□□ -0.6
LSM1-205ENST00000523511 FAM213BQ8TBF2 198 aa11.3□□□□□ -0.6
LSM1-205ENST00000523511 C9JCJ5 164 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 RTL8CO15255 209 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 H2AFB1P0C5Y9 115 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 BTF3P20290 206 aaKnown RBP11.29□□□□□ -0.6
LSM1-205ENST00000523511 TMUB2Q71RG4 321 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 C6orf223Q8N319 242 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 MBD3L1Q8WWY6 194 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 ZNF479Q96JC4 524 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 LINC00479Q96M42 142 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 TXNDC17Q9BRA2 123 aa11.29□□□□□ -0.6
LSM1-205ENST00000523511 TRAV34A0A0B4J273 112 aa11.28□□□□□ -0.6
LSM1-205ENST00000523511 SRIP30626 198 aa11.28□□□□□ -0.6
LSM1-205ENST00000523511 RAB5CP51148 216 aa11.28□□□□□ -0.6
LSM1-205ENST00000523511 ZNF80P51504 273 aaPredicted RBP11.28□□□□□ -0.6
LSM1-205ENST00000523511 PTH2Q96A98 100 aa11.28□□□□□ -0.6
LSM1-205ENST00000523511 TRAV9-2A0A087WT02 112 aa11.27□□□□□ -0.61
LSM1-205ENST00000523511 SFTA3P0C7M3 94 aa11.27□□□□□ -0.61
LSM1-205ENST00000523511 BIRC6Q9NR09 4857 aa11.27□□□□□ -0.61
LSM1-205ENST00000523511 PAGE4O60829 102 aa11.26□□□□□ -0.61
LSM1-205ENST00000523511 ASIPP42127 132 aa11.26□□□□□ -0.61
LSM1-205ENST00000523511 BOLA1Q9Y3E2 137 aa11.26□□□□□ -0.61
LSM1-205ENST00000523511 TRBV6-1A0A0K0K1D8 114 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 SIVA1O15304 175 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 GYPEP15421 78 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 AKR1C3P42330 323 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 PIK3CD-AS1Q5SR53 167 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 FAM162BQ5T6X4 162 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 LYPD5Q6UWN5 251 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 Q86TA4 180 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 TCTE3Q8IZS6 198 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 PRADC1Q9BSG0 188 aa11.25□□□□□ -0.61
LSM1-205ENST00000523511 B4DEV8 164 aa11.24□□□□□ -0.61
LSM1-205ENST00000523511 K7EQD1 137 aa11.24□□□□□ -0.61
LSM1-205ENST00000523511 COX8CQ7Z4L0 72 aa11.24□□□□□ -0.61
LSM1-205ENST00000523511 SYT8Q8NBV8 401 aa11.24□□□□□ -0.61
LSM1-205ENST00000523511 C9orf85Q96MD7 179 aa11.24□□□□□ -0.61
LSM1-205ENST00000523511 C11orf21Q9P2W6 132 aa11.24□□□□□ -0.61
LSM1-205ENST00000523511 A8MWV9 139 aa11.23□□□□□ -0.61
LSM1-205ENST00000523511 K7EP13 123 aa11.23□□□□□ -0.61
LSM1-205ENST00000523511 A0A1B0GV50 99 aa11.22□□□□□ -0.61
LSM1-205ENST00000523511 TRBV6-4A0A1B0GX49 114 aa11.22□□□□□ -0.61
LSM1-205ENST00000523511 RS1O15537 224 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms