RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 HLA-DRB4X5D2U9 266 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 TNCP24821 2201 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 IGLV2-8P01709 118 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 RPL35AP18077 110 aaKnown RBP10.86□□□□□ -0.67
SYNPO-205ENST00000522122 C6orf226Q5I0X4 101 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 GATD1Q8NB37 220 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 KLK9Q9UKQ9 250 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 IGKV1-17P01599 117 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 AGPAT4-IT1Q9H0P7 198 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 DKK2Q9UBU2 259 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 KLF12Q9Y4X4 402 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 PROP1O75360 226 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 S100A7L2Q5SY68 101 aa10.86□□□□□ -0.67
SYNPO-205ENST00000522122 TRBV20-1A0A075B6N2 111 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 TRAV8-3A0A0A6YYJ7 113 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 I3L3M4 83 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 A0A1W2PNU3 283 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-205ENST00000522122 CDKN1BP46527 198 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 DYNAPQ8N1N2 210 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 SCRT2Q9NQ03 307 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 K7EP34 96 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 SIVA1O15304 175 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 DEFB125Q8N687 156 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 C20orf78Q9BR46 151 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 JPT2Q9H910 190 aa10.85□□□□□ -0.67
SYNPO-205ENST00000522122 IGLV2-23P01705 113 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 SPINK8P0C7L1 97 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 C11orf68Q9H3H3 251 aaKnown RBP10.84□□□□□ -0.67
SYNPO-205ENST00000522122 CEP192Q8TEP8 1941 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 LEPROTO15243 131 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 OR11H6Q8NGC7 330 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 XCL2Q9UBD3 114 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 I3L2K1 104 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 Q6ZVH6 145 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 PRSS33Q8NF86 280 aa10.84□□□□□ -0.67
SYNPO-205ENST00000522122 A0A1W2PPM0 123 aa10.83□□□□□ -0.68
SYNPO-205ENST00000522122 K7EIM0 57 aa10.83□□□□□ -0.68
SYNPO-205ENST00000522122 TAL2Q16559 108 aa10.83□□□□□ -0.68
SYNPO-205ENST00000522122 ZNF625Q96I27 306 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-205ENST00000522122 TRAV12-2A0A075B6T6 113 aa10.83□□□□□ -0.68
SYNPO-205ENST00000522122 RNF223E7ERA6 249 aa10.83□□□□□ -0.68
SYNPO-205ENST00000522122 GTSF1Q8WW33 167 aa10.83□□□□□ -0.68
SYNPO-205ENST00000522122 CACNA1AO00555 2505 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 CSPG4Q6UVK1 2322 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 F8W1H4 67 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 LINC01545Q5VT33 79 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 IGHV7-4-1A0A0J9YVY3 117 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 LGALS1P09382 135 aaKnown RBP10.82□□□□□ -0.68
SYNPO-205ENST00000522122 CGB3P0DN86 165 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 CGB7P0DN87 165 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 TCTEX1D4Q5JR98 221 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 LENEPQ9Y5L5 61 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 CEND1Q8N111 149 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 LINC00574Q9H8X3 128 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 NOTCH2Q04721 2471 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 LINC00173Q6ZV60 143 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 Q8N7P7 452 aa10.82□□□□□ -0.68
SYNPO-205ENST00000522122 TECTAO75443 2155 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 A0A1B0GXF2 115 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 RITA1Q96K30 269 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 CTRLP40313 264 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 RBAKDNA6NC62 111 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 C1orf229Q6ZS94 237 aaPredicted RBP10.81□□□□□ -0.68
SYNPO-205ENST00000522122 MAPK1IP1LQ8NDC0 245 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 MRPL53Q96EL3 112 aaKnown RBP10.81□□□□□ -0.68
SYNPO-205ENST00000522122 TRBV6-1A0A0K0K1D8 114 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 GRNP28799 593 aaKnown RBP10.81□□□□□ -0.68
SYNPO-205ENST00000522122 MSMPQ1L6U9 139 aa10.81□□□□□ -0.68
SYNPO-205ENST00000522122 IGHV3-16A0A0C4DH30 117 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 CFHR4Q92496 578 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 FOXE3Q13461 319 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 LINC01619G3V211 115 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 OVOL2Q9BRP0 275 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 DEFB130BP0DP73 79 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 DEFB130AP0DP74 79 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 ZNF493Q6ZR52 646 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 PCP2Q8IVA1 136 aa10.8□□□□□ -0.68
SYNPO-205ENST00000522122 TSSC4Q9Y5U2 329 aaPredicted RBP10.8□□□□□ -0.68
SYNPO-205ENST00000522122 WNK1Q9H4A3 2382 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 C19orf71A6NCJ1 209 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 C2orf70A6NJV1 201 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 HOXB4P17483 251 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-205ENST00000522122 PPDPFLQ8WWR9 84 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 PRO1854Q9UHT4 67 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 NDUFA12Q9UI09 145 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 TNRC6AQ8NDV7 1962 aaKnown RBP10.79□□□□□ -0.68
SYNPO-205ENST00000522122 MED12LQ86YW9 2145 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 IGLV11-55A0A075B6I3 123 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 GAGE12JA6NER3 117 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 F6UB75 175 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 GAGE4Q13068 117 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 GAGE5Q13069 117 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 NPBQ8NG41 125 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 IGKV1D-37A0A075B6S9 117 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 CENPVL3A0A0U1RRI6 287 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 J3QQQ9 107 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 K7ERJ3 54 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 GATA1P15976 413 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-205ENST00000522122 SEM1Q6ZVN7 128 aa10.79□□□□□ -0.68
SYNPO-205ENST00000522122 MBD6Q96DN6 1003 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms