RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 MYOZ3Q8TDC0 251 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 PHLDA1Q8WV24 401 aaPredicted RBP4.24□□□□□ -1.73
NUP54-218ENST00000515460 DNAJA3Q96EY1 480 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 C9orf85Q96MD7 179 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 ZNF488Q96MN9 340 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 JPT2Q9H910 190 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 FZR1Q9UM11 496 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 TCF19Q9Y242 345 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 FREM3P0C091 2139 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 IGHV4-61A0A0C4DH41 118 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 LOC107986453A0A1B0GWG9 222 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 M0R1B8 84 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 PAGE4O60829 102 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 FCGR3BO75015 233 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 MPDU1O75352 247 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 LEPROTL1O95214 131 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 INSL3P51460 131 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 DYNLT3P51808 116 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 SLC38A11Q08AI6 406 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 VWC2Q2TAL6 325 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 Q5XG85 94 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 GAGE2AQ6NT46 116 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 HRCT1Q6UXD1 115 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 MED12LQ86YW9 2145 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 TMEM255BQ8WV15 326 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 ZC2HC1AQ96GY0 325 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 HILPDAQ9Y5L2 63 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 TMEM14AQ9Y6G1 99 aa4.23□□□□□ -1.73
NUP54-218ENST00000515460 IGHV1-18A0A0C4DH31 117 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 SH2D7A6NKC9 451 aaPredicted RBP4.22□□□□□ -1.73
NUP54-218ENST00000515460 A8MWV9 139 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 LINC01619G3V211 115 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 OVOL1O14753 267 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 MRPL33O75394 65 aaKnown RBP4.22□□□□□ -1.73
NUP54-218ENST00000515460 IGLV2-11P01706 119 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 IGFBP3P17936 291 aaPredicted RBP4.22□□□□□ -1.73
NUP54-218ENST00000515460 CD164Q04900 197 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 TMEM187Q14656 261 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 ZNF726P1Q15940 193 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 MMD2Q8IY49 270 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 C1orf158Q8N1D5 194 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 ABHD12Q8N2K0 398 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 FAM19A2Q8N3H0 131 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 ANKRD29Q8N6D5 301 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 OR10AC1Q8NH08 325 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 OR2T6Q8NHC8 308 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 LINC01600Q96MT4 127 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 TMEM222Q9H0R3 208 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 TNFRSF19Q9NS68 423 aa4.22□□□□□ -1.73
NUP54-218ENST00000515460 DSCAMO60469 2012 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 FAM240AA0A1B0GVK7 77 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 FAM24AA6NFZ4 105 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 A8MWL6 223 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 TEX22C9J3V5 150 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 C11orf94C9JXX5 98 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 NDUFC2-KCTD14E9PQ53 114 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 WNT9BO14905 357 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 NDUFB4O95168 129 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 TRACP01848 142 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 LGALS1P09382 135 aaKnown RBP4.21□□□□□ -1.74
NUP54-218ENST00000515460 HLA-DOBP13765 273 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 PSMB8P28062 276 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 CSN1S1P47710 185 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 RPL30P62888 115 aaKnown RBP4.21□□□□□ -1.74
NUP54-218ENST00000515460 HBG1P69891 147 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 HBG2P69892 147 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 EBI3Q14213 229 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 ATP5L2Q7Z4Y8 100 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 FAM19A1Q7Z5A9 133 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 HMGN2P46Q86SG4 172 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 STHQ8IWL8 128 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 ZCCHC24Q8N2G6 241 aaKnown RBP4.21□□□□□ -1.74
NUP54-218ENST00000515460 LRRC29Q8WV35 223 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 IL1F10Q8WWZ1 152 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 C4orf45Q96LM5 186 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 TMEM59Q9BXS4 323 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 ZNF331Q9NQX6 463 aaPredicted RBP4.21□□□□□ -1.74
NUP54-218ENST00000515460 OSTCQ9NRP0 149 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 EXPH5Q8NEV8 1989 aa4.21□□□□□ -1.74
NUP54-218ENST00000515460 TRAV4A0A0B4J268 109 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 IZUMO1RA6ND01 250 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 LYNX1G3V0Z9 82 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 J3QQQ9 107 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 HMGN4O00479 90 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 PLXNB1O43157 2135 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 SCGB1C2P0DMR2 95 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 LYNX1P0DP58 116 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 COX7CP15954 63 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 FKBP2P26885 142 aaKnown RBP4.2□□□□□ -1.74
NUP54-218ENST00000515460 HLA-DMBP28068 263 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 PFN2P35080 140 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 KRTAP10-5P60370 271 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 RTL8BQ17RB0 113 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 LGALS9BQ3B8N2 356 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 LGALS9CQ6DKI2 356 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 TMEM14EPQ6UXP3 125 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 ACP7Q6ZNF0 438 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 FAM231DQ6ZW35 169 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 C6orf201Q7Z4U5 140 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 TBC1D26Q86UD7 250 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms