RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TP53TG3Q9ULZ0 132 aa10.14□□□□□ -0.79
NUP54-216ENST00000514901 LGALS9BQ3B8N2 356 aa10.13□□□□□ -0.79
NUP54-216ENST00000514901 TEX261Q6UWH6 196 aa10.13□□□□□ -0.79
NUP54-216ENST00000514901 TMEM183AQ8IXX5 376 aa10.13□□□□□ -0.79
NUP54-216ENST00000514901 LINC00612Q8N6U2 182 aa10.13□□□□□ -0.79
NUP54-216ENST00000514901 FAM210BQ96KR6 192 aa10.13□□□□□ -0.79
NUP54-216ENST00000514901 SPXQ9BT56 116 aa10.13□□□□□ -0.79
NUP54-216ENST00000514901 SPINK4O60575 86 aa10.12□□□□□ -0.79
NUP54-216ENST00000514901 FAM162BQ5T6X4 162 aa10.12□□□□□ -0.79
NUP54-216ENST00000514901 BAGE2Q86Y30 109 aa10.12□□□□□ -0.79
NUP54-216ENST00000514901 IGLL5B9A064 214 aa10.11□□□□□ -0.79
NUP54-216ENST00000514901 ATP5G1P05496 136 aa10.11□□□□□ -0.79
NUP54-216ENST00000514901 RPL35P42766 123 aaKnown RBP10.11□□□□□ -0.79
NUP54-216ENST00000514901 ZC2HC1AQ96GY0 325 aa10.11□□□□□ -0.79
NUP54-216ENST00000514901 C18orf15Q96N68 181 aa10.11□□□□□ -0.79
NUP54-216ENST00000514901 MDFICQ9P1T7 246 aa10.11□□□□□ -0.79
NUP54-216ENST00000514901 PLECQ15149 4684 aaKnown RBP10.1□□□□□ -0.79
NUP54-216ENST00000514901 TRGV1A0A0A0MS02 117 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 IGHV3-16A0A0C4DH30 117 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 GAGE12BA1L429 117 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 RBFOX3A6NFN3 312 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 GNRH2O43555 120 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 GAGE7O76087 117 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 TYMSP04818 313 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 GAGE12FP0CL80 117 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 GAGE12GP0CL81 117 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 GAGE12IP0CL82 117 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 HTN3P15516 51 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 ZNF674Q2M3X9 581 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 MLST8Q9BVC4 326 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 MED9Q9NWA0 146 aa10.1□□□□□ -0.79
NUP54-216ENST00000514901 TRGV2A0A075B6R0 118 aa10.09□□□□□ -0.79
NUP54-216ENST00000514901 NDUFS6O75380 124 aaKnown RBP10.09□□□□□ -0.79
NUP54-216ENST00000514901 Q6ZTI0 123 aa10.09□□□□□ -0.79
NUP54-216ENST00000514901 SMIM12Q96EX1 92 aa10.09□□□□□ -0.79
NUP54-216ENST00000514901 NDUFAF3Q9BU61 184 aa10.09□□□□□ -0.79
NUP54-216ENST00000514901 C11orf21Q9P2W6 132 aa10.09□□□□□ -0.79
NUP54-216ENST00000514901 MUC4Q99102 2169 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 IGHV4-4A0A075B6R2 117 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 F5H768 121 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 M0R2P5 195 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 SH2D1AO60880 128 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 ORM1P02763 201 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 CRIP1P50238 77 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 ZNF506Q5JVG8 444 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 RASL10AQ92737 203 aa10.08□□□□□ -0.8
NUP54-216ENST00000514901 DNAH1Q9P2D7 4330 aa10.07□□□□□ -0.8
NUP54-216ENST00000514901 IGKV3D-20A0A0C4DH25 116 aa10.07□□□□□ -0.8
NUP54-216ENST00000514901 B4DEV8 164 aa10.07□□□□□ -0.8
NUP54-216ENST00000514901 TMEM250H0YL14 139 aa10.07□□□□□ -0.8
NUP54-216ENST00000514901 LYSTQ99698 3801 aa10.07□□□□□ -0.8
NUP54-216ENST00000514901 APLNQ9ULZ1 77 aa10.07□□□□□ -0.8
NUP54-216ENST00000514901 LCE6AA0A183 80 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 KRBOX1C9JBD0 128 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 S100A4P26447 101 aaKnown RBP10.06□□□□□ -0.8
NUP54-216ENST00000514901 GNG4P50150 75 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 LINC01559Q495D7 138 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 CENPWQ5EE01 88 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 DNLZQ5SXM8 178 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 NHLRC2Q8NBF2 726 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 PTH2Q96A98 100 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 FAM210AQ96ND0 272 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 DERL1Q9BUN8 251 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 EIF5A2Q9GZV4 153 aaKnown RBP10.06□□□□□ -0.8
NUP54-216ENST00000514901 BIN3Q9NQY0 253 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 MRPL16Q9NX20 251 aaKnown RBP10.06□□□□□ -0.8
NUP54-216ENST00000514901 ALMS1Q8TCU4 4167 aa10.06□□□□□ -0.8
NUP54-216ENST00000514901 RAB19A4D1S5 217 aa10.05□□□□□ -0.8
NUP54-216ENST00000514901 ASIPP42127 132 aa10.05□□□□□ -0.8
NUP54-216ENST00000514901 C15orf53Q8NAA6 179 aa10.05□□□□□ -0.8
NUP54-216ENST00000514901 C9orf85Q96MD7 179 aa10.05□□□□□ -0.8
NUP54-216ENST00000514901 KMT2CQ8NEZ4 4911 aaKnown RBP10.04□□□□□ -0.8
NUP54-216ENST00000514901 RNASE3P12724 160 aaKnown RBP10.04□□□□□ -0.8
NUP54-216ENST00000514901 SLAQ13239 276 aa10.04□□□□□ -0.8
NUP54-216ENST00000514901 OR5I1Q13606 314 aa10.04□□□□□ -0.8
NUP54-216ENST00000514901 TOR2AQ5JU69 321 aa10.04□□□□□ -0.8
NUP54-216ENST00000514901 PIK3CD-AS1Q5SR53 167 aa10.04□□□□□ -0.8
NUP54-216ENST00000514901 LGALS9CQ6DKI2 356 aa10.04□□□□□ -0.8
NUP54-216ENST00000514901 TMEM88Q6PEY1 159 aa10.04□□□□□ -0.8
NUP54-216ENST00000514901 DAZAP1Q96EP5 407 aaKnown RBP10.04□□□□□ -0.8
NUP54-216ENST00000514901 C9JCJ5 164 aa10.03□□□□□ -0.8
NUP54-216ENST00000514901 M0R036 132 aa10.03□□□□□ -0.8
NUP54-216ENST00000514901 CXCL1P09341 107 aa10.03□□□□□ -0.8
NUP54-216ENST00000514901 MGST1P10620 155 aaKnown RBP10.03□□□□□ -0.8
NUP54-216ENST00000514901 ZNF876PQ49A33 203 aa10.03□□□□□ -0.8
NUP54-216ENST00000514901 IL36BQ9NZH7 164 aa10.03□□□□□ -0.8
NUP54-216ENST00000514901 SACSQ9NZJ4 4579 aa10.03□□□□□ -0.8
NUP54-216ENST00000514901 TRAV4A0A0B4J268 109 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 H3BNG1 76 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 CIDEAO60543 219 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 IGLV2-8P01709 118 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 RAB14P61106 215 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 PRR27Q6MZM9 219 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 LINC00476Q8WZB0 136 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 PARLQ9H300 379 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 SMDT1Q9H4I9 107 aa10.02□□□□□ -0.81
NUP54-216ENST00000514901 HOXA5P20719 270 aa10.01□□□□□ -0.81
NUP54-216ENST00000514901 PEA15Q15121 130 aa10.01□□□□□ -0.81
NUP54-216ENST00000514901 OR4C5Q8NGB2 326 aa10.01□□□□□ -0.81
NUP54-216ENST00000514901 TRBV20OR9-2A0A075B6H5 130 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms