RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZNF747Q9BV97 191 aa9.98□□□□□ -0.81
USP53-209ENST00000514665 KIAA1549LQ6ZVL6 1849 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 ETDBQ3ZM63 59 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 MORN3Q6PF18 240 aaPredicted RBP9.97□□□□□ -0.81
USP53-209ENST00000514665 ODF3L1Q8IXM7 274 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 C5orf42Q9H799 3197 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 GP9P14770 177 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 MALP21145 153 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 FOXE3Q13461 319 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 MSRB1Q9NZV6 116 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 NCKAP5O14513 1909 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 KIR2DL5BA0A0G2JN68 375 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 KIR2DL5BA0A0G2JPC4 375 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 OCIAD2Q56VL3 154 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 KIR2DL5AQ8N109 375 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 LINC01356Q8N9X3 169 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 TIMM21Q9BVV7 248 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 SMIM2Q9BVW6 85 aa9.97□□□□□ -0.81
USP53-209ENST00000514665 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.96□□□□□ -0.81
USP53-209ENST00000514665 BRWD1-AS2P59051 145 aa9.96□□□□□ -0.81
USP53-209ENST00000514665 BVES-AS1Q5T3Y7 98 aa9.96□□□□□ -0.81
USP53-209ENST00000514665 LY6G5BQ8NDX9 201 aa9.96□□□□□ -0.81
USP53-209ENST00000514665 A0A087WX48 190 aa9.96□□□□□ -0.82
USP53-209ENST00000514665 RBMY1BA6NDE4 496 aaKnown RBP9.96□□□□□ -0.82
USP53-209ENST00000514665 RBMY1EA6NEQ0 496 aaKnown RBP9.96□□□□□ -0.82
USP53-209ENST00000514665 RBMY1DP0C7P1 496 aaKnown RBP9.96□□□□□ -0.82
USP53-209ENST00000514665 RBMY1A1P0DJD3 496 aaKnown RBP9.96□□□□□ -0.82
USP53-209ENST00000514665 RBMY1CP0DJD4 496 aa9.96□□□□□ -0.82
USP53-209ENST00000514665 C1orf122Q6ZSJ8 110 aa9.96□□□□□ -0.82
USP53-209ENST00000514665 ZNF295-AS1Q8N0V1 137 aa9.96□□□□□ -0.82
USP53-209ENST00000514665 C8orf31Q8N9H6 132 aa9.96□□□□□ -0.82
USP53-209ENST00000514665 I3L2K1 104 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 NDUFA4O00483 81 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 PAX4O43316 350 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 PRADC1Q9BSG0 188 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 LTBP2Q14767 1821 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 INSP01308 110 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 TCTEX1D4Q5JR98 221 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 PRIMA1Q86XR5 153 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 WIPF2Q8TF74 440 aaPredicted RBP9.95□□□□□ -0.82
USP53-209ENST00000514665 C9JAW5 83 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 DEFB130BP0DP73 79 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 DEFB130AP0DP74 79 aa9.95□□□□□ -0.82
USP53-209ENST00000514665 COL4A4P53420 1690 aaPredicted RBP9.94□□□□□ -0.82
USP53-209ENST00000514665 TRPT1Q86TN4 253 aaKnown RBP9.94□□□□□ -0.82
USP53-209ENST00000514665 PCP2Q8IVA1 136 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 ARHGAP32A7KAX9 2087 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 K7ERJ3 54 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 NDUFS8O00217 210 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 DPH3Q96FX2 82 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 C9orf118A6NHY6 69 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 F8VRH5 84 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 GNRH2O43555 120 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 CKS1BP61024 79 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 ATXN8Q156A1 80 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 TMEM131Q92545 1883 aa9.94□□□□□ -0.82
USP53-209ENST00000514665 IGHV7-81A0A0B4J1V7 117 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 ANAPC13Q9BS18 74 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 IGHV1OR15-1A0A075B7D0 117 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 TRAV8-4A0A0B4J246 113 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 IGHV3-38A0A0C4DH36 116 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 PMVKQ15126 192 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 C2orf82Q6UX34 121 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 AMTNQ6UX39 209 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 GTSF1Q8WW33 167 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 CFHR4Q92496 578 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 GAGE2BQ13066 116 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 GAGE2EQ4V326 116 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 OR11H6Q8NGC7 330 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 IGF2BP2-AS1Q96M15 143 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 GAGE2DQ9UEU5 116 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 PKD1L2Q7Z442 2459 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 CTSGP08311 255 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 P0C879 139 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 CFHR3Q02985 330 aa9.93□□□□□ -0.82
USP53-209ENST00000514665 KLF5Q13887 457 aaPredicted RBP9.93□□□□□ -0.82
USP53-209ENST00000514665 CDKN1BP46527 198 aa9.92□□□□□ -0.82
USP53-209ENST00000514665 TMEM86BQ8N661 226 aa9.92□□□□□ -0.82
USP53-209ENST00000514665 GATD1Q8NB37 220 aa9.92□□□□□ -0.82
USP53-209ENST00000514665 TRAV8-3A0A0A6YYJ7 113 aa9.92□□□□□ -0.82
USP53-209ENST00000514665 IGLV1-47P01700 117 aa9.92□□□□□ -0.82
USP53-209ENST00000514665 RASL10AQ92737 203 aa9.92□□□□□ -0.82
USP53-209ENST00000514665 CENPVL3A0A0U1RRI6 287 aa9.92□□□□□ -0.82
USP53-209ENST00000514665 SP5Q6BEB4 398 aaPredicted RBP9.92□□□□□ -0.82
USP53-209ENST00000514665 K7EP13 123 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 HOXB4P17483 251 aaPredicted RBP9.91□□□□□ -0.82
USP53-209ENST00000514665 ANKRD39Q53RE8 183 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 C6orf226Q5I0X4 101 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 FN1P02751 2386 aaKnown RBP9.91□□□□□ -0.82
USP53-209ENST00000514665 HCFC1P51610 2035 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 GAGE12JA6NER3 117 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 BLCAPP62952 87 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 GAGE1Q13065 139 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 GAGE4Q13068 117 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 GAGE5Q13069 117 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 PRUNE2Q8WUY3 3088 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 KIAA1549Q9HCM3 1950 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 IGLV11-55A0A075B6I3 123 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 C22orf34Q6ZV56 151 aa9.91□□□□□ -0.82
USP53-209ENST00000514665 IGHV7-4-1A0A0J9YVY3 117 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms