RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 LINC00305Q7Z4B0 112 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 VGLL1Q99990 258 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 NAV2Q8IVL1 2488 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 SVEP1Q4LDE5 3571 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 F8W1H4 67 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 UBE2L3P68036 154 aaKnown RBP5.67□□□□□ -1.5
CLIP1-205ENST00000514271 CFAP126Q5VTH2 177 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 HCP5Q6MZN7 132 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 PCP2Q8IVA1 136 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 ZNF502Q8TBZ5 544 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 Q9H3A6 140 aa5.67□□□□□ -1.5
CLIP1-205ENST00000514271 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.66□□□□□ -1.58e-13■■■■□ 25.9
CLIP1-205ENST00000514271 INAFM1C9JVW0 142 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 SLC25A39Q9BZJ4 359 aaPredicted RBP5.66□□□□□ -1.5
CLIP1-205ENST00000514271 TPSG1Q9NRR2 321 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 ERG28Q9UKR5 140 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 TEX48A0A1B0GUV7 120 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 A0A1W2PRD5 423 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 A0A1W2PRF3 423 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 A0A1W2PRM7 423 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 IFI27P40305 119 aaPredicted RBP5.66□□□□□ -1.5
CLIP1-205ENST00000514271 EBI3Q14213 229 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 MRPL53Q96EL3 112 aaKnown RBP5.66□□□□□ -1.5
CLIP1-205ENST00000514271 FAM19A4Q96LR4 140 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 SHANK2-AS3Q9BTD1 123 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 PLEKHA3Q9HB20 300 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 GNG12Q9UBI6 72 aa5.66□□□□□ -1.5
CLIP1-205ENST00000514271 A0A087WX48 190 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 BUB1B-PAK6H3BSN5 160 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 GAS8-AS1O95177 125 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 NHLRC4P0CG21 123 aaPredicted RBP5.65□□□□□ -1.5
CLIP1-205ENST00000514271 SMAGPQ0VAQ4 97 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 DIAPH2-AS1Q14236 149 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 CD300EQ496F6 205 aaPredicted RBP5.65□□□□□ -1.5
CLIP1-205ENST00000514271 MRPL51Q4U2R6 128 aaKnown RBP5.65□□□□□ -1.5
CLIP1-205ENST00000514271 MAPK1IP1LQ8NDC0 245 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 MRPL20Q9BYC9 149 aaKnown RBP5.65□□□□□ -1.5
CLIP1-205ENST00000514271 SMAD5-AS1Q9Y6J3 95 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 NAV3Q8IVL0 2385 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 K7EIM0 57 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 CCL3L1P16619 93 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 PDE6HQ13956 83 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 SDIM1Q6ZPB5 146 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 NFE4Q86UQ8 179 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 CEND1Q8N111 149 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 OR2K2Q8NGT1 345 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 RFESDQ8TAC1 157 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 C16orf95Q9H693 158 aa5.65□□□□□ -1.5
CLIP1-205ENST00000514271 IGLL5B9A064 214 aa5.65□□□□□ -1.51
CLIP1-205ENST00000514271 SAA4P35542 130 aa5.65□□□□□ -1.51
CLIP1-205ENST00000514271 PRR31Q5SQ13 230 aa5.65□□□□□ -1.51
CLIP1-205ENST00000514271 MAPKAPK5-AS1Q8N8E1 139 aa5.65□□□□□ -1.51
CLIP1-205ENST00000514271 HECTD1Q9ULT8 2610 aa5.65□□□□□ -1.51
CLIP1-205ENST00000514271 FBN2P35556 2912 aa5.65□□□□□ -1.51
CLIP1-205ENST00000514271 IGHV7-4-1A0A0J9YVY3 117 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 NTF3P20783 257 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 ERVK-16P61578 105 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 APRG1Q8IVJ8 170 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 MRPL16Q9NX20 251 aaKnown RBP5.64□□□□□ -1.51
CLIP1-205ENST00000514271 TNCP24821 2201 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 TRAV12-1A0A0B4J245 112 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 A0A1B0GUT8 65 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 CD7P09564 240 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 LEAP2Q969E1 77 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 CARD19Q96LW7 228 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 SPANXA1Q9NS26 97 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 F11RQ9Y624 299 aaKnown RBP5.64□□□□□ -1.51
CLIP1-205ENST00000514271 AVPP01185 164 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 APOA2P02652 100 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 ZNF80P51504 273 aaPredicted RBP5.64□□□□□ -1.51
CLIP1-205ENST00000514271 TTC9CQ8N5M4 171 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 PGLYRP4Q96LB8 373 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 RETNQ9HD89 108 aa5.64□□□□□ -1.51
CLIP1-205ENST00000514271 MED13LQ71F56 2210 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 ANK3Q12955 4377 aaKnown RBP5.63□□□□□ -1.51
CLIP1-205ENST00000514271 TRBV25-1A0A075B6N4 114 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 NPIPB5A8MRT5 1133 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 NDUFA3O95167 84 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 IGHV4-38-2P0DP08 117 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 MYOZ3Q8TDC0 251 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 NPIPB3Q92617 1050 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 AP5S1Q9NUS5 200 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 ABCA12Q86UK0 2595 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 A6NDX4 124 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 ZNF491Q8N8L2 437 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 GTSF1LQ9H1H1 148 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 DKK2Q9UBU2 259 aa5.63□□□□□ -1.51
CLIP1-205ENST00000514271 TINCRA0A1B0GVN0 87 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 NPYP01303 97 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 COX7A1P24310 79 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 DEFB112Q30KQ8 113 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 GTF2H5Q6ZYL4 71 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 Q8N2B8 174 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 Q8N6K4 173 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 OR4C13Q8NGP0 309 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 IL17DQ8TAD2 202 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 ENY2Q9NPA8 101 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 MOB4Q9Y3A3 225 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 AKAP6Q13023 2319 aa5.62□□□□□ -1.51
CLIP1-205ENST00000514271 CELSR1Q9NYQ6 3014 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms