RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CRIPAKQ8N1N5 446 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 MPLKIPQ8TAP9 179 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 PAPPAQ13219 1627 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 IGHV3-38A0A0C4DH36 116 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 MDC1Q14676 2089 aaKnown RBP8.83□□□□□ -1
LIMCH1-217ENST00000512946 CTRLP40313 264 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 Q8NFD4 153 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 DOCK11Q5JSL3 2073 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 TRAV23DV6A0A075B6W5 121 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 NUPR1O60356 82 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 SAA4P35542 130 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 MIAQ16674 131 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 C3orf56Q8N813 242 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 MDS2Q8NDY4 140 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 DEFB105AQ8NG35 78 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 TCL1BO95988 128 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 RPL18AQ02543 176 aaKnown RBP8.82□□□□□ -1
LIMCH1-217ENST00000512946 IGF2BP2-AS1Q96M15 143 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 FANCD2OSQ96PS1 177 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 ECM29Q5VYK3 1845 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 LYNX1G3V0Z9 82 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 LYNX1P0DP58 116 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 ZNF503Q96F45 646 aa8.82□□□□□ -1
LIMCH1-217ENST00000512946 TAF1P21675 1872 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 TEX36Q5VZQ5 186 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 FAM110AQ9BQ89 295 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 FREM3P0C091 2139 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 NDUFA1O15239 70 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 CAMK2N2Q96S95 79 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 WISP1O95388 367 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 XCL1P47992 114 aa8.81□□□□□ -1
LIMCH1-217ENST00000512946 PIKFYVEQ9Y2I7 2098 aa8.8□□□□□ -1
LIMCH1-217ENST00000512946 LHBP01229 141 aa8.8□□□□□ -1
LIMCH1-217ENST00000512946 LINC01356Q8N9X3 169 aa8.8□□□□□ -1
LIMCH1-217ENST00000512946 C15orf65H3BRN8 121 aa8.8□□□□□ -1
LIMCH1-217ENST00000512946 TIMM17BO60830 172 aa8.8□□□□□ -1
LIMCH1-217ENST00000512946 TRBV30A0A0K0K1B3 111 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 RNF144BQ7Z419 303 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 ARHGEF17Q96PE2 2063 aaPredicted RBP8.79□□□□□ -1
LIMCH1-217ENST00000512946 THSD7AQ9UPZ6 1657 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 SMIM9A6NGZ8 99 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 C2orf70A6NJV1 201 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 C17orf58Q2M2W7 97 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 LINC00173Q6ZV60 143 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 SCN5AQ14524 2016 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 COL11A1P12107 1806 aaPredicted RBP8.79□□□□□ -1
LIMCH1-217ENST00000512946 A6NED7 52 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 BLCAPP62952 87 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 CLEC2BQ92478 149 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 SERP1Q9Y6X1 66 aa8.79□□□□□ -1
LIMCH1-217ENST00000512946 IGHV4-28A0A0C4DH34 117 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 CSRP1P21291 193 aaKnown RBP8.78□□□□□ -1
LIMCH1-217ENST00000512946 COX7BP24311 80 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 FHL1Q13642 323 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 SPTBN1Q01082 2364 aaKnown RBP8.78□□□□□ -1
LIMCH1-217ENST00000512946 J3QLI3 93 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 GP9P14770 177 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 LINC00205P59089 165 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 CASC2Q6XLA1 102 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 FAM19A3Q7Z5A8 133 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 COLQQ9Y215 455 aaPredicted RBP8.78□□□□□ -1
LIMCH1-217ENST00000512946 ARFGEF1Q9Y6D6 1849 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.78□□□□□ -1
LIMCH1-217ENST00000512946 IGKV2-29A2NJV5 120 aaPredicted RBP8.78□□□□□ -1
LIMCH1-217ENST00000512946 DAND5Q8N907 189 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 MDFICQ9P1T7 246 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 KAAG1Q9UBP8 84 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 C9orf47Q6ZRZ4 202 aa8.78□□□□□ -1
LIMCH1-217ENST00000512946 C17orf82Q86X59 251 aaPredicted RBP8.78□□□□□ -1
LIMCH1-217ENST00000512946 EP300Q09472 2414 aaPredicted RBP8.77□□□□□ -1
LIMCH1-217ENST00000512946 MPDZO75970 2070 aa8.77□□□□□ -1
LIMCH1-217ENST00000512946 CEP250Q9BV73 2442 aa8.77□□□□□ -1
LIMCH1-217ENST00000512946 PRB4P10163 310 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 B3GALT5-AS1P59052 145 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 C5orf38Q86SI9 138 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 PINLYPA6NC86 204 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 K7EQD1 137 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 TIRAPP58753 221 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 CLPSP04118 112 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 RNF138Q8WVD3 245 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 ZNF581Q9P0T4 197 aa8.77□□□□□ -1.01
LIMCH1-217ENST00000512946 C16orf74Q96GX8 76 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 MYO16Q9Y6X6 1858 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 SIPA1L3O60292 1781 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 IGLV3-1P01715 115 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 NCOR1O75376 2440 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 DOCK4Q8N1I0 1966 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 TEX22C9J3V5 150 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 CGB7P0DN87 165 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 C5orf24Q7Z6I8 188 aa8.76□□□□□ -1.01
LIMCH1-217ENST00000512946 WI2-2373I1.2A0A1W2PRP0 233 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 LYPD2Q6UXB3 125 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 SPRY4Q9C004 299 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 FANCMQ8IYD8 2048 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 ATAD5Q96QE3 1844 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 ARFGEF3Q5TH69 2177 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 TRBV10-1A0A0K0K1A3 114 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 PRB2P02812 416 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 RNASE13Q5GAN3 156 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 C20orf203Q8NBC4 194 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms