RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 VWCEQ96DN2 955 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 BBC3Q96PG8 261 aaPredicted RBP2.8□□□□□ -1.96
USP53-205ENST00000509769 TRBV7-6A0A0J9YX20 115 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 A0A1W2PRX2 142 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 LECT2O14960 151 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 ZNF726P1Q15940 193 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 SHISA2Q6UWI4 295 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 IGF2BP2-AS1Q96M15 143 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 IBA57-AS1B1ANH7 110 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 SRRM5B3KS81 715 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 SMKR1H3BMG3 65 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 LYPD3O95274 346 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 IGKV1D-33P01593 117 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 IGKV1-33P01594 117 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 CCKP06307 115 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 LMO1P25800 156 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 DEFB112Q30KQ8 113 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 ITLN2Q8WWU7 325 aaPredicted RBP2.79□□□□□ -1.96
USP53-205ENST00000509769 YLPM1P49750 1951 aaKnown RBP2.79□□□□□ -1.96
USP53-205ENST00000509769 IGKV1D-16P01601 117 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 IGHV3-33P01772 117 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 TIRAPP58753 221 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 UBE2D3P61077 147 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 DIAPH2-AS1Q14236 149 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 PIK3CD-AS1Q5SR53 167 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.79□□□□□ -1.96
USP53-205ENST00000509769 RNF144BQ7Z419 303 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 NDUFA4L2Q9NRX3 87 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 TRBV10-1A0A0K0K1A3 114 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 A0A1B0GXF2 115 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 TGFBR3LH3BV60 316 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 FOXF2Q12947 444 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 SMIM14Q96QK8 99 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 TTTY12Q9BZ98 90 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 IGKV3-7A0A075B6H7 116 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 IGHV3OR16-12A0A075B7B8 117 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 CEP290O15078 2479 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 CFHR3Q02985 330 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 ENHOQ6UWT2 76 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 C16orf47Q6ZP98 133 aaPredicted RBP2.79□□□□□ -1.96
USP53-205ENST00000509769 WDR86Q86TI4 376 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 EXOC3-AS1Q8N2X6 119 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 ODF3Q96PU9 254 aa2.79□□□□□ -1.96
USP53-205ENST00000509769 PRRC2BQ5JSZ5 2229 aaKnown RBP2.78□□□□□ -1.96
USP53-205ENST00000509769 SCN2AQ99250 2005 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 GREB1Q4ZG55 1949 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 IGHV1-3A0A0C4DH29 117 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 TNRC18O15417 2968 aaPredicted RBP2.78□□□□□ -1.96
USP53-205ENST00000509769 COL8A2P25067 703 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 SDIM1Q6ZPB5 146 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 C17orf77Q96MU5 243 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 DCTN5Q9BTE1 182 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 TRBV6-5A0A0K0K1A5 114 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 NDUFA1O15239 70 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 CRYGDP07320 174 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 COX6B1P14854 86 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 TDRG1Q3Y452 100 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 DHRS4-AS1Q9P1J3 65 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 U3KQK5 164 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 IGKV1-9A0A0C4DH69 117 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 CCL24O00175 119 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 MRPS12O15235 138 aaKnown RBP2.78□□□□□ -1.96
USP53-205ENST00000509769 FOXS1O43638 330 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 PATE4P0C8F1 98 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 SPAG11AQ6PDA7 123 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 KTN1-AS1Q86SY8 53 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 DEFB119Q8N690 84 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 SCN10AQ9Y5Y9 1956 aa2.78□□□□□ -1.96
USP53-205ENST00000509769 ZNFX1Q9P2E3 1918 aaKnown RBP2.78□□□□□ -1.97
USP53-205ENST00000509769 TRGV1A0A0A0MS02 117 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 ZNF80P51504 273 aaPredicted RBP2.77□□□□□ -1.97
USP53-205ENST00000509769 NSUN5P1Q3KNT7 163 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 ATP11AUNQ6ZP68 121 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 Q8N6K4 173 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 WFDC5Q8TCV5 224 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 UCN2Q96RP3 112 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 DLG5Q8TDM6 1919 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 TEX49A0A1B0GTD5 131 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 IGHV3-13P01766 116 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 IGKV4-1P06312 121 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 MSMBP08118 114 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 ZNF833PQ6ZTB9 187 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 PSMG3-AS1Q96PY0 264 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 XAGE1AQ9HD64 81 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 C17orf100A8MU93 164 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 GATA3P23771 443 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 CRYBA2P53672 197 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 LCE2DQ5TA82 110 aaPredicted RBP2.77□□□□□ -1.97
USP53-205ENST00000509769 CD177Q8N6Q3 437 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 TTC28Q96AY4 2481 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 IGHV3-64DA0A0J9YX35 117 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 WI2-2373I1.2A0A1W2PRP0 233 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 C7orf65Q6ZTY9 151 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 Q6ZVQ6 151 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 B9D2Q9BPU9 175 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 DENND4AQ7Z401 1863 aa2.77□□□□□ -1.97
USP53-205ENST00000509769 IGHV5-51A0A0C4DH38 117 aa2.76□□□□□ -1.97
USP53-205ENST00000509769 A0A0J9YY99 117 aa2.76□□□□□ -1.97
USP53-205ENST00000509769 HCG22E2RYF7 251 aa2.76□□□□□ -1.97
USP53-205ENST00000509769 ELOF1P60002 83 aaKnown RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms