RNA–Protein interactions for RNA: ENST00000509102.5

UBE3D-207, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,246 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-207ENST00000509102 MRPS16Q9Y3D3 137 aaKnown RBP12.94□□□□□ -0.34
UBE3D-207ENST00000509102 IFNA7P01567 189 aa12.93□□□□□ -0.34
UBE3D-207ENST00000509102 PPT1P50897 306 aa12.93□□□□□ -0.34
UBE3D-207ENST00000509102 FLI1Q01543 452 aaPredicted RBP12.93□□□□□ -0.34
UBE3D-207ENST00000509102 PCNPQ8WW12 178 aaKnown RBP12.93□□□□□ -0.34
UBE3D-207ENST00000509102 NKX6-2Q9C056 277 aaPredicted RBP12.93□□□□□ -0.34
UBE3D-207ENST00000509102 MUC4Q99102 2169 aa12.93□□□□□ -0.34
UBE3D-207ENST00000509102 A0A1B0GVY2 172 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 GGTLC3B5MD39 225 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 M0R2P5 195 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 MRPL23Q16540 153 aaKnown RBP12.92□□□□□ -0.34
UBE3D-207ENST00000509102 SMUG1Q53HV7 270 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 SAPCD1Q5SSQ6 148 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 PRNTQ86SH4 94 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 TMEM75Q8N9X5 138 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 TVP23CQ96ET8 276 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 C8orf49Q96NF6 230 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 DNAH2Q9P225 4427 aa12.92□□□□□ -0.34
UBE3D-207ENST00000509102 IGHV3-16A0A0C4DH30 117 aa12.91□□□□□ -0.34
UBE3D-207ENST00000509102 CRYBA4P53673 196 aa12.91□□□□□ -0.34
UBE3D-207ENST00000509102 STOML3Q8TAV4 291 aa12.91□□□□□ -0.34
UBE3D-207ENST00000509102 A0A1W2PPQ1 181 aa12.9□□□□□ -0.34
UBE3D-207ENST00000509102 G3V3Q6 166 aa12.9□□□□□ -0.34
UBE3D-207ENST00000509102 GNRH2O43555 120 aa12.9□□□□□ -0.34
UBE3D-207ENST00000509102 GCGP01275 180 aa12.9□□□□□ -0.34
UBE3D-207ENST00000509102 TYMSP04818 313 aa12.9□□□□□ -0.34
UBE3D-207ENST00000509102 PFN1P07737 140 aaKnown RBP12.9□□□□□ -0.34
UBE3D-207ENST00000509102 FHL2Q14192 279 aa12.9□□□□□ -0.34
UBE3D-207ENST00000509102 OR4C5Q8NGB2 326 aa12.9□□□□□ -0.34
UBE3D-207ENST00000509102 TRAV4A0A0B4J268 109 aa12.89□□□□□ -0.35
UBE3D-207ENST00000509102 ORM1P02763 201 aa12.89□□□□□ -0.35
UBE3D-207ENST00000509102 SFTA3P0C7M3 94 aa12.89□□□□□ -0.35
UBE3D-207ENST00000509102 UBE2G2P60604 165 aa12.89□□□□□ -0.35
UBE3D-207ENST00000509102 ZNF345Q14585 488 aa12.89□□□□□ -0.35
UBE3D-207ENST00000509102 ZNF726P1Q15940 193 aa12.89□□□□□ -0.35
UBE3D-207ENST00000509102 ZNF479Q96JC4 524 aa12.89□□□□□ -0.35
UBE3D-207ENST00000509102 MAP1LC3B2A6NCE7 125 aa12.88□□□□□ -0.35
UBE3D-207ENST00000509102 C9JCJ5 164 aa12.88□□□□□ -0.35
UBE3D-207ENST00000509102 SRIP30626 198 aa12.88□□□□□ -0.35
UBE3D-207ENST00000509102 FGF8P55075 233 aaPredicted RBP12.88□□□□□ -0.35
UBE3D-207ENST00000509102 NEGR1Q7Z3B1 354 aa12.88□□□□□ -0.35
UBE3D-207ENST00000509102 HIST1H2BAQ96A08 127 aa12.88□□□□□ -0.35
UBE3D-207ENST00000509102 MAP1LC3BQ9GZQ8 125 aa12.88□□□□□ -0.35
UBE3D-207ENST00000509102 FAT2Q9NYQ8 4349 aa12.87□□□□□ -0.35
UBE3D-207ENST00000509102 SMLR1H3BR10 107 aa12.87□□□□□ -0.35
UBE3D-207ENST00000509102 IGLV2-11P01706 119 aa12.87□□□□□ -0.35
UBE3D-207ENST00000509102 BTF3P20290 206 aaKnown RBP12.87□□□□□ -0.35
UBE3D-207ENST00000509102 KCNRGQ8N5I3 272 aa12.87□□□□□ -0.35
UBE3D-207ENST00000509102 TXNDC17Q9BRA2 123 aa12.87□□□□□ -0.35
UBE3D-207ENST00000509102 CYTL1Q9NRR1 136 aa12.87□□□□□ -0.35
UBE3D-207ENST00000509102 A0A0D9SG52 128 aa12.86□□□□□ -0.35
UBE3D-207ENST00000509102 KANTRA0A1W2PQU2 76 aa12.86□□□□□ -0.35
UBE3D-207ENST00000509102 PEX7O00628 323 aa12.86□□□□□ -0.35
UBE3D-207ENST00000509102 SIVA1O15304 175 aa12.86□□□□□ -0.35
UBE3D-207ENST00000509102 DNAH17Q9UFH2 4485 aa12.86□□□□□ -0.35
UBE3D-207ENST00000509102 FAM74A7A6NL05 159 aa12.85□□□□□ -0.35
UBE3D-207ENST00000509102 HMSDA8MTL9 139 aa12.85□□□□□ -0.35
UBE3D-207ENST00000509102 CIDEAO60543 219 aa12.85□□□□□ -0.35
UBE3D-207ENST00000509102 NXPH4O95158 308 aa12.85□□□□□ -0.35
UBE3D-207ENST00000509102 GYPEP15421 78 aa12.85□□□□□ -0.35
UBE3D-207ENST00000509102 ZNF80P51504 273 aaPredicted RBP12.85□□□□□ -0.35
UBE3D-207ENST00000509102 EIF5AP63241 154 aaKnown RBP12.85□□□□□ -0.35
UBE3D-207ENST00000509102 ZNF876PQ49A33 203 aa12.85□□□□□ -0.35
UBE3D-207ENST00000509102 TCEAL7Q9BRU2 100 aa12.85□□□□□ -0.35
UBE3D-207ENST00000509102 TRAV34A0A0B4J273 112 aa12.84□□□□□ -0.35
UBE3D-207ENST00000509102 UMAD1C9J7I0 102 aa12.84□□□□□ -0.35
UBE3D-207ENST00000509102 K7EQD1 137 aa12.84□□□□□ -0.35
UBE3D-207ENST00000509102 S100A4P26447 101 aaKnown RBP12.84□□□□□ -0.35
UBE3D-207ENST00000509102 UBE2G1P62253 170 aa12.84□□□□□ -0.35
UBE3D-207ENST00000509102 SH2D6Q7Z4S9 175 aa12.84□□□□□ -0.35
UBE3D-207ENST00000509102 ZNF471Q9BX82 626 aaPredicted RBP12.84□□□□□ -0.35
UBE3D-207ENST00000509102 ARL2-SNX15V9GYD0 113 aa12.84□□□□□ -0.35
UBE3D-207ENST00000509102 FABP5P3A8MUU1 101 aa12.83□□□□□ -0.36
UBE3D-207ENST00000509102 SEC11BP0C7V7 166 aa12.83□□□□□ -0.36
UBE3D-207ENST00000509102 MED14OSP0DP75 135 aa12.83□□□□□ -0.36
UBE3D-207ENST00000509102 TNP2Q05952 138 aa12.83□□□□□ -0.36
UBE3D-207ENST00000509102 CST9LP1Q5W188 147 aa12.83□□□□□ -0.36
UBE3D-207ENST00000509102 LYPD5Q6UWN5 251 aa12.83□□□□□ -0.36
UBE3D-207ENST00000509102 LINC00479Q96M42 142 aa12.83□□□□□ -0.36
UBE3D-207ENST00000509102 TRAV9-2A0A087WT02 112 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 BCL2L11O43521 198 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 PFDN1O60925 122 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 FHITP49789 147 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 Q86TA4 180 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 FMC1Q96HJ9 113 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 C11orf21Q9P2W6 132 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 ZFP30Q9Y2G7 519 aa12.82□□□□□ -0.36
UBE3D-207ENST00000509102 NHLRC2Q8NBF2 726 aa12.81□□□□□ -0.36
UBE3D-207ENST00000509102 FAM213BQ8TBF2 198 aa12.81□□□□□ -0.36
UBE3D-207ENST00000509102 ASIPP42127 132 aa12.8□□□□□ -0.36
UBE3D-207ENST00000509102 DPPA3Q6W0C5 159 aa12.8□□□□□ -0.36
UBE3D-207ENST00000509102 SFT2D1Q8WV19 159 aa12.8□□□□□ -0.36
UBE3D-207ENST00000509102 PTH2Q96A98 100 aa12.8□□□□□ -0.36
UBE3D-207ENST00000509102 C9orf85Q96MD7 179 aa12.8□□□□□ -0.36
UBE3D-207ENST00000509102 PRADC1Q9BSG0 188 aa12.8□□□□□ -0.36
UBE3D-207ENST00000509102 KRTAP1-5Q9BYS1 174 aa12.8□□□□□ -0.36
UBE3D-207ENST00000509102 GATA1P15976 413 aaPredicted RBP12.79□□□□□ -0.36
UBE3D-207ENST00000509102 OR11H4Q8NGC9 324 aa12.79□□□□□ -0.36
UBE3D-207ENST00000509102 LY96Q9Y6Y9 160 aa12.79□□□□□ -0.36
UBE3D-207ENST00000509102 PKHD1P08F94 4074 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms